Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05793 ATGATGTTATCAGCTTCGCCATCTACCCTTGCGAGAAGCTCTCTGGAAGAAATGCTTGAATCTCTTCGCCGGAGAGATGAAGAGGAGAAGCCGAAGGACCTGCCGCCGGCATTGCCGGCGAGGCCAACGTCGAGAGCTCGGTTACCGTCGGCGAGAAGGTCTTTGCCTAATAGCCTCAAGGTTGATGGAGGGAATGAGAAGGGCAAAGGGCACAAGAGGAAAGGTAGTTTTGGACACAAGAAGTTGAAGGTGGATTTGGAATCACCTTACGTGGCTGAATCAGAAGAGAAAATTAGTGAAAGATCATCACCGGGTCCCGTTTCAACGTCTGCTGAGGACTCTGCTGCTTCTGTAGCTCCACCTTCCCGGGAATTGGAAGATGACAACGTTGCTTATTTCATCAAAAAGAAACTTCATGTTTGGTGTAGGCAACCAAAAGGGAGGTGGGAACTGGGAAAGATACAGTCGACTTCAGGAGAGGAAGCATTGGTTTCACTCTCAGATGGAAATATTATGCAAGTTGCCAGAACAGAGCTCCTACCAGCTAATCCTGATATTCTAGAGGGTGTGGATGATCTTATACAGCTCAGTTATTTAAATGAGCCCTCAGTTCTTCACAATCTTAAATTCAGATATTCTCAAGATATGATTTACAGTAAAGCAGGGCCAATTTTAATTGCACTCAATCCCTTCAAAGATGTACAGGTTTATGGAAATGATTATATCTCAGCTTATAGGCAGAAATTTGTTGATAGTCCTCATGTTTATGCTATGGCAGATGCAGCTTATAATGAGATGATAAGAGATGAAGTAAATCAGTCCATTATCATAAGTGGTGAGAGTGGATCTGGGAAAACAGAGACAGCAAAATTTGCTATGCAATACTTAGCTGCTCTTGGTGGTGGCAGTTGTGGGTTAGAAAATGAAGTTCTTCAGACAAATTTTATACTAGAAGCTTTTGGGAATGCAAAAACATCTAGGAATGACAACTCTAGCAGATTTGGGAAGTTGATTGAAATTCATTTCAGCACTCTGGGGAAAATTTGTGGGGCTAAAATTCAAACCTGTAAGCATGTTCAATCAAGAGTTGTTCAATTGGCCAGTGGCGAGAGGTCATATCATATATTTTATCAACTTTGTGCTGGATCTTCACCTGATCTTAAAGAGAGACTGAATCTCAGAGTGGCCAGCGAATATAAATATCTTAATCAGAGTGACTGCATGGCAATTGATGGTGTTGATGATGCTAAAAAGTTTCATAGGCTGATGAAAGCATTGGATGTTGTTCAGATGTGCAAAGAAGATCAAGAGGTGGTCTTTAAGATGCTCTCTGCGATATTATGGCTGGGAAATATATCATTCCAAGTTAATGATAATGAAAATCATGTTGAGGTCATGAATGATGAAGCTGTAACCAGTGCTGCTTTGCTCATGGGTTGCAGTTCTCAGGAGTTAATGACAGCATTATCTACCCATAAAATCCAAGCTGGCAAGGATACTATTACCAAAAGATTAACGTTGCAGCAGGCAATAGATGCAAGAGATGCTTTAGCGAAATTTATCTATGCAAGCTTGTTTGACTGGCTTGTAGAACAAGTTAACAAGTCACTTGAAGTGGGTAAACGACGTACTGGGAGATCCATAAGTATCCTTGATATTTATGGATTTGAGTCATTCCAGAAAAACAGCTTTGAACAGTTTTGTATAAATTATGCTAATGAGAGGCTTCAACAGCATTTCAATCGGCACCTGTTTAAACTTGAGCAGGAGGACTACGAATTAGATGGCGTTGATTGGACCAAAGTAGAATTTGAGGACAATCAAGTGTGCTTGGATCTCTTTGAGAAGAAGCCTTTGGGACTATTCTCTTTGTTAGATGAGGAATCAAATTTCCCCAGGGCCACTGATATAACACTTGCCAACAAACTTAGGCAGCACCTGCACACTAATCGTTGCTTTAAAGGGGAAAGAGGCAGGGCTTTCAGTGTTTGTCATTATGCAGGGGAGGTTTTATATGATACAAATGGCTTTCTAGAAAAGAACAGAGATCCACTGCCTTCTGATTCCATTCAACTACTGTCATCATGTAGTTGTGAATTGCTGCAGTTGTTCTCCAAGATGCTTAACACATCTCAGAAGCAATCAAATTCCCTGCACATAGGTGCTCTGGATTCACAAAAGCAGAGTGTTGGCACAAAGTTCAAGGGTCAATTGTTCAAGTTGATGCATCAGTTGGAGAGCACCACACCTCACTTTATTCGCTGTATAAAGCCAAATACTAAGCAACTTCCTGGCATATATGATGAAGATCTTGTCCTGCAACAGCTCAAGTGTTGTGGAGTTTTGGAGGTTGTACGGATTTCAAGGGCTGGATATCCTACTCGAATGACACACCAAGAGTTTGCCAAAAGGTACGGGTTTCTGCTGTCTGAGGCCAATTCATCTCAAGATTCATTGAGCATCTCAGTTGCTGTTTTGCAACAATTTAATATCCCTCCTGAAATGTACCAAGTTGGCTTCACCAAACTGTATCTTCGAACAGGGCAGGTTGGTGCACTGGAGGATAGGAGAAAACAGGTTTTGCAGGGAATAGTTGGGGTTCAAAAATGCTTTCGTGGTCATCGAGCTCGCAATTATTACCATGAACTTAAGAATGGAGTGACAACTTTACAATCATGTAATGCTGTTGTTCGTGGAGAAATTGCAAGAAGGAAATATGGTGTTATGGTGAAGTCTTCTATAACTATTTCTTCTGAAAAAATTGAGGAGATAGAGGCAATCATAATGCTACAATCTGTAATTCGTGGGTGGCTGGTTCGAAGGCATGCCAATAGCTTGAATAAGTTTAAGAAATATCCTGAAAATGCAAAACCTAGGCGGAAGTCACGTGTGAAAATGCCAGAAGTCAAGGATGTGTCCAATGAACGGTTCCAGAATCTGCCTTCGGCTTTGGCAGAACTCCAAAGGCGGGTTGTCAAGGCTGAAGCAACCATAGAGCAAAAGGAAGAGGAAAATGCTGAATTGAGGGAACAGCTAAAACAATTTGAGAGAAGGTGGATTGAATATGAGACAAAGATGAAATCAATGGAGGAGATGTGGCAAAAACAAATGGCATCTTTGCAAATGAGTCTTGCTGCTGCTAGAAGCAGCCTTGCTTCTGTGAATGCCACTAGTCAACATGTAAGACATGATGTTGCATCATCTTTCTGCTATGATTCTGAAGATGCTACTTCCATGGGATCTCGAACTCCTCGAACGCCTGGTGCCAGCACACCTTTGAAGTATTCTAGCAGTCTTTCTGAAGTTGCAACAAGGAGAGATGCTAATGGTACTTTGACTACAGTCAACAATCTAATGAAGGAATTTGAGCAGTCCAGACAGACCTTTGATGATGATGCCAAAGCTCTTATTGAAGTTAAAACCGGGCAATCCGCGAGCACGAATTCCATTGAAGAACTTAGGAGACTCAAACATAGGTTTGAGGGGTGGAAGAAAGAATACAAGCTTAGATTAAGAGAGACAAAAGCAAGACTTTATAAATTGGGGAATTCAGAAATGGATAAAAGCAGGAGAAAATGGTGGGGGAAGTTAAGTTCTAGGGGACTATAG 3609 0.4159 MMLSASPSTLARSSLEEMLESLRRRDEEEKPKDLPPALPARPTSRARLPSARRSLPNSLKVDGGNEKGKGHKRKGSFGHKKLKVDLESPYVAESEEKISERSSPGPVSTSAEDSAASVAPPSRELEDDNVAYFIKKKLHVWCRQPKGRWELGKIQSTSGEEALVSLSDGNIMQVARTELLPANPDILEGVDDLIQLSYLNEPSVLHNLKFRYSQDMIYSKAGPILIALNPFKDVQVYGNDYISAYRQKFVDSPHVYAMADAAYNEMIRDEVNQSIIISGESGSGKTETAKFAMQYLAALGGGSCGLENEVLQTNFILEAFGNAKTSRNDNSSRFGKLIEIHFSTLGKICGAKIQTCKHVQSRVVQLASGERSYHIFYQLCAGSSPDLKERLNLRVASEYKYLNQSDCMAIDGVDDAKKFHRLMKALDVVQMCKEDQEVVFKMLSAILWLGNISFQVNDNENHVEVMNDEAVTSAALLMGCSSQELMTALSTHKIQAGKDTITKRLTLQQAIDARDALAKFIYASLFDWLVEQVNKSLEVGKRRTGRSISILDIYGFESFQKNSFEQFCINYANERLQQHFNRHLFKLEQEDYELDGVDWTKVEFEDNQVCLDLFEKKPLGLFSLLDEESNFPRATDITLANKLRQHLHTNRCFKGERGRAFSVCHYAGEVLYDTNGFLEKNRDPLPSDSIQLLSSCSCELLQLFSKMLNTSQKQSNSLHIGALDSQKQSVGTKFKGQLFKLMHQLESTTPHFIRCIKPNTKQLPGIYDEDLVLQQLKCCGVLEVVRISRAGYPTRMTHQEFAKRYGFLLSEANSSQDSLSISVAVLQQFNIPPEMYQVGFTKLYLRTGQVGALEDRRKQVLQGIVGVQKCFRGHRARNYYHELKNGVTTLQSCNAVVRGEIARRKYGVMVKSSITISSEKIEEIEAIIMLQSVIRGWLVRRHANSLNKFKKYPENAKPRRKSRVKMPEVKDVSNERFQNLPSALAELQRRVVKAEATIEQKEEENAELREQLKQFERRWIEYETKMKSMEEMWQKQMASLQMSLAAARSSLASVNATSQHVRHDVASSFCYDSEDATSMGSRTPRTPGASTPLKYSSSLSEVATRRDANGTLTTVNNLMKEFEQSRQTFDDDAKALIEVKTGQSASTNSIEELRRLKHRFEGWKKEYKLRLRETKARLYKLGNSEMDKSRRKWWGKLSSRGL. 1203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05793 1202 MobiDBLite consensus disorder prediction 1 15 - -
Seca3g05793 1202 Gene3D Kinesin motor domain 187 791 IPR036961 -
Seca3g05793 1202 FunFam Myosin IE heavy chain 428 536 - -
Seca3g05793 1202 Pfam IQ calmodulin-binding motif 864 881 IPR000048 GO:0005515
Seca3g05793 1202 Pfam IQ calmodulin-binding motif 925 942 IPR000048 GO:0005515
Seca3g05793 1202 Gene3D - 864 912 - -
Seca3g05793 1202 MobiDBLite consensus disorder prediction 80 100 - -
Seca3g05793 1202 MobiDBLite consensus disorder prediction 17 35 - -
Seca3g05793 1202 Pfam Myosin head (motor domain) 190 846 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca3g05793 1202 MobiDBLite consensus disorder prediction 1 122 - -
Seca3g05793 1202 MobiDBLite consensus disorder prediction 101 116 - -
Seca3g05793 1202 PRINTS Myosin heavy chain signature 315 342 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca3g05793 1202 PRINTS Myosin heavy chain signature 547 575 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca3g05793 1202 PRINTS Myosin heavy chain signature 600 628 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca3g05793 1202 PRINTS Myosin heavy chain signature 272 297 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca3g05793 1202 PRINTS Myosin heavy chain signature 218 237 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca3g05793 1202 MobiDBLite consensus disorder prediction 1075 1097 - -
Seca3g05793 1202 Gene3D - 371 427 - -
Seca3g05793 1202 FunFam Unconventional myosin-XIX 559 748 - -
Seca3g05793 1202 SMART MYSc_2a 182 859 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca3g05793 1202 ProSiteProfiles Myosin motor domain profile. 188 858 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca3g05793 1202 ProSiteProfiles IQ motif profile. 923 951 IPR000048 GO:0005515
Seca3g05793 1202 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 947 IPR027417 -
Seca3g05793 1202 Gene3D - 559 748 - -
Seca3g05793 1202 Gene3D Myosin VI head, motor domain, U50 subdomain 428 536 - -
Seca3g05793 1202 FunFam Myosin heavy chain 371 427 - -
Seca3g05793 1202 Coils Coil 984 1032 - -
Seca3g05793 1202 ProSiteProfiles IQ motif profile. 862 889 IPR000048 GO:0005515
Seca3g05793 1202 PANTHER MYOSIN 181 1194 - -
Seca3g05793 1202 Gene3D - 792 859 - -
Seca3g05793 1202 CDD MYSc_Myo8 202 846 IPR036022 -
Seca3g05793 1202 SMART iq_5 882 907 IPR000048 GO:0005515
Seca3g05793 1202 SMART iq_5 859 881 IPR000048 GO:0005515
Seca3g05793 1202 SMART iq_5 922 944 IPR000048 GO:0005515
Seca3g05793 1202 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 135 184 IPR004009 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05793 Seca-Chr3 119331171 119342207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05793 1 1196 Myosins gene family AT5G54280 63.570 0.0 1575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05793 K10357 - gmx:100801876 1955.64