Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05789 ATGTGTGTCCTACTCACTTCTTCAAAATCGAATCTTCACCCTCCCTCAAAATCTGTGCTCACCACTTCCCCCACCATGAACACTCCTCAAAATCATGACTCACATGTTTCACACATGCACTACGAGTACCACTACACTACGGACGACGACGAAGAAGACGACGTCGTTGGAGACAGCGACCTGGAAGACGACGTCGTTATAGACTACGCGGAGGAGAATGAGGAAAAAAAAGAAGGAGAAGCCAAGGTGGTGTTATGTGGGCAAAGACACAGTAATTGGTCTCTGGGGCGGGTTCTATTTGACCCGAAAGGAAAATGGGTTCAAGAATGGAACAGGGTGTTTCTCCTGGTGTGCACTATGGGTTTGTTCGTCGACCCTCTCTTCTTCTACGCCCTATCCATAAGCGACACGTGTATGTGCCTCTTCGTCGACGGTTGGCTCGTTATAACCGTCACTGTTATCCGCTGCATGACGGACGCGTTGCACCTTTGGAACATGTGGTTGCAGTTCAACATCGCTAAACACTCCAACTTTCCCACCATCCACACTCACAGGGGTTTCTTCTTTGACCTCTTTGTCATCCTTCCTATACCTCAGATTGTGCTATGGGTTGCAATTCCGTCTCTGCTAGAGAAAGGATCAATTACGTTGGTGATGACAGTGTTCTTAATAATGTTCCTGTTTCAATACCTTCCCAAAATTTATCACTCAGTGTGCACCTTGCGTCGCATGCAAAACCTCTCTGGCTACATTTTCGGGACCGTTTGGTGGGGTATCGCTCTCAACATGATCGCATATTTTGTCGCCTCTCATGCAGCAGGGGCATGTTGGTACTTGTTGGGGATCCAAAGGGCAGCGAAGTGCTTGGAAGAGCAATGTGGGAAAACAGGTGGTTGTGGATTAAGAACACTATGTTGCAAAGAAGCTATATACTATGGAACGAGTAGCATGGTGAAAGACAGGACAAGGTTGGCATGGGCAGAGAACAGGGAAGCGAGGTCTACATGTCTAGCTAGCTCAGACAATTACGATTATGGAGCTTATAAATGGACTGTTCAACTTGTAGCAAATGATAACCGATTGGAAAAGATTCTCTTGCCTATCTTCTGGGGCCTAATGACTCTCAGCACTTTCGGGAGCCTCGAGAGCACGACGGAACGGACAGAAGTGGTTTTCAACATAATTGTGTTGACTAGTGGCCTCCTTCTAGTCACTATGTTAATAGGAAACATCAAGGTGTTTTTACATGCTACAACATCAAAGAAGCAAGCTATGAAATTGAAGATGAGGAACATAGAATGGTGGATGAGCAAAAGGCGTTTGCCACAAGGGCTCAGGCAGCGTGTGCGAAACTACGAGCAGTGTTGGGCTGCCATGCGTGGGGTTGATGAATGCCAAATGATCAAAAATCTCCCTGAGGGGCTTAGAAGGGACATCAAGTACCATCTATGTTTGGATTTGGTCAGACAGGTGCCTCTATTTCAGCATATGGATGAGTTGGTGCTAGAGAACATTTGTGACCGTGTGAAGTCCCTTGTATTCACAAAGGGAGAAACAATAACGAGAGAGGGAGACCCAGTTCAAAGAATGATATTTGTGGTAAGGGGTCACCTTCAGAGCAGCCAAGTCCTAAGAGATGGGGTGAAAAGTTGCTGCATGTTAGGCCCTGGGAATTTCAGTGGGGATGAGCTACTTTCATGGTGTTTGAGAAGACCATTTATAGAACGCCTTCCACCATCATCATCCACTTTGGTCACACTTGAAACCACAGAGGCATTTGGGCTTGAAGCAGAGGATGTGAAGTATGTGACACAACATTTTAGGTACACTTTTGTGAAGGAAAAGGTTAAGAGAAGTGCTAGGTATTACTCACCTGGATGGAGAACTTGGGCTGCTGTGGCCATTCAATTGGCTTGGAGGAGGTATAAGCACCGTTTGACTTTGACATCTTTGTCCTTTATAAGGCCTAGGAGACCTGTCTCAAGGTGCACTTCCATGGAAGAGGATAGGCTTCGCCTCTATACGGCTATGTTAACCTCACCAAAGCCTAATCAAGATGATTTTGATTTTTCATGA 2076 0.4615 MCVLLTSSKSNLHPPSKSVLTTSPTMNTPQNHDSHVSHMHYEYHYTTDDDEEDDVVGDSDLEDDVVIDYAEENEEKKEGEAKVVLCGQRHSNWSLGRVLFDPKGKWVQEWNRVFLLVCTMGLFVDPLFFYALSISDTCMCLFVDGWLVITVTVIRCMTDALHLWNMWLQFNIAKHSNFPTIHTHRGFFFDLFVILPIPQIVLWVAIPSLLEKGSITLVMTVFLIMFLFQYLPKIYHSVCTLRRMQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAKCLEEQCGKTGGCGLRTLCCKEAIYYGTSSMVKDRTRLAWAENREARSTCLASSDNYDYGAYKWTVQLVANDNRLEKILLPIFWGLMTLSTFGSLESTTERTEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMKLKMRNIEWWMSKRRLPQGLRQRVRNYEQCWAAMRGVDECQMIKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDELVLENICDRVKSLVFTKGETITREGDPVQRMIFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLVTLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPVSRCTSMEEDRLRLYTAMLTSPKPNQDDFDFS. 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05789 691 MobiDBLite consensus disorder prediction 6 34 - -
Seca3g05789 691 CDD CAP_ED 493 599 IPR000595 -
Seca3g05789 691 SUPERFAMILY Voltage-gated potassium channels 101 414 - -
Seca3g05789 691 Gene3D Helix hairpin bin 419 484 - -
Seca3g05789 691 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 89 687 - -
Seca3g05789 691 Gene3D Jelly Rolls 491 609 IPR014710 -
Seca3g05789 691 SUPERFAMILY cAMP-binding domain-like 420 607 IPR018490 -
Seca3g05789 691 ProSiteProfiles cAMP/cGMP binding motif profile. 493 603 IPR000595 -
Seca3g05789 691 SMART cnmp_10 493 622 IPR000595 -
Seca3g05789 691 FunFam Cyclic nucleotide-gated ion channel 1 421 484 - -
Seca3g05789 691 FunFam cyclic nucleotide-gated ion channel 4 491 609 - -
Seca3g05789 691 Pfam Cyclic nucleotide-binding domain 513 601 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05789 Seca-Chr3 119109460 119117307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05789 86 689 Ion Channels AT5G54250 76.814 0.0 996
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05789 K05391 - gmx:100800795 1076.62