Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05781 ATGGGATCTTGCGTTTCAAATGGATCAATCAGTGTTATGTCTTCTCCTACCCTGGTTGCACCTCAAGTTCCCGATTCTTCACCCGACTGGAGTGGTCTGGATGATACTGCACAAGGTTCCGAGAAGGATGAGATGAATGATTTCTTGGAAAGTGATGGCAGGAATGAGCTAGAGAAACCTTCAGTGAATGCTCCAAAGCATCAACCTGCAACTGGTGATATAATGGCTATTCGTGATGTTAATGAAATAACAAAGGGAGAAGAAAGGGTGAAAATTTCATGGGTGAATAACAGTACTAATGATTCTCCAACATCCTTTCACTACATACCACGAAACCTTGTGTTCAAAGATGCATATGTTAATTTTTCACTATCTCAAATCAGGAATGAGGATTGTTGCTCTACTTGTATGGGCAATTGTGTCTTGTCATCTAAACCATGTTTGTGTGCAAATAAAACTGGGGGTGAATTGGCTTACACTGCACAAGGCCTAATAAAGGAAGAGTTCTTGGATGAGTGTATTGCCATCATCCGGGACCCTCAAAATTATTTTTATTGCAAAGACTGCTCGCTTGAAAGATCAAAGAGTGATGATTGTTTAGAACCATGTAAAGGACACTTGAAGAGGAAGTTTATTAAAGAGTGTTGGAGTAAATGTGGTTGTGGTAAACAATGTGGCAATCGGGTTGTGCAGCGTGGAATTACTTGCAACTTGCAGGTGTTTTTAACTTCAGACGGAAAAGGGTGGGGTCTTCGTACCTTAGAGGATCTTCCAAAAGGTGAATTTATTTGTGAGTTTGTTGGAGAAATTTTGACTGTCAAAAAGTTGCATGAGAGGAACTTGAAATATCCCAAAAATGGGAAATTTACATACCCAATTTTATTGGATGCCGATTGGGGTTCTAGAGCCGTGAAGGATAATGAAGCTCTTTGCTTATATGCAGCAACATTTGGAAATGTTGCTAGGTTTATTAACCACATATGTTTAGATGCAAACTTAATTGAGATCCCGGTTGAAGTTGAGGGCCCAACTCATCACTACTATCATTTTGCCTTCTTCACATCCAGGAAAATTGCAGCACAGGAAGAGCTCACTTGGGATTATGGCATTAACTTTGATGATCATGACCAGCTAGTTAAGTTGTTCCGGTGCAAATATGGCAGTAAATTCTGTAGGAATATGAAGCGATCAAATAGTAAGTTCAACCTTCCATTTCTGTGTAATATTCAGAAGTTTGTTTTACATTCAACGTTAATGATGAAGCTATTGGTAGGAATTATCTTGTCTTTTTTGTGA 1296 0.3912 MGSCVSNGSISVMSSPTLVAPQVPDSSPDWSGLDDTAQGSEKDEMNDFLESDGRNELEKPSVNAPKHQPATGDIMAIRDVNEITKGEERVKISWVNNSTNDSPTSFHYIPRNLVFKDAYVNFSLSQIRNEDCCSTCMGNCVLSSKPCLCANKTGGELAYTAQGLIKEEFLDECIAIIRDPQNYFYCKDCSLERSKSDDCLEPCKGHLKRKFIKECWSKCGCGKQCGNRVVQRGITCNLQVFLTSDGKGWGLRTLEDLPKGEFICEFVGEILTVKKLHERNLKYPKNGKFTYPILLDADWGSRAVKDNEALCLYAATFGNVARFINHICLDANLIEIPVEVEGPTHHYYHFAFFTSRKIAAQEELTWDYGINFDDHDQLVKLFRCKYGSKFCRNMKRSNSKFNLPFLCNIQKFVLHSTLMMKLLVGIILSFL. 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05781 431 Pfam SET domain 248 369 IPR001214 GO:0005515
Seca3g05781 431 Gene3D SET domain 75 380 IPR046341 -
Seca3g05781 431 MobiDBLite consensus disorder prediction 1 34 - -
Seca3g05781 431 CDD SET_SETDB-like 105 369 - -
Seca3g05781 431 SMART preset_2 80 220 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca3g05781 431 ProSiteProfiles Pre-SET domain profile. 132 233 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca3g05781 431 SMART set_7 236 375 IPR001214 GO:0005515
Seca3g05781 431 ProSiteProfiles SET domain profile. 236 369 IPR001214 GO:0005515
Seca3g05781 431 Pfam Pre-SET motif 83 228 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca3g05781 431 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 52 399 - -
Seca3g05781 431 MobiDBLite consensus disorder prediction 1 45 - -
Seca3g05781 431 SUPERFAMILY SET domain 79 377 IPR046341 -
Seca3g05781 431 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 13 426 IPR025776 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05781 Seca-Chr3 118911106 118914200 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05781 212 369 C2H2 Transcription Factor Family AT2G23740 40.000 5.25e-28 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca3g05781 Pre-SET 2.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05781 - - gmx:100809678 652.129