Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05759 ATGGATCTTATGTCAGAAACAATCCAGAGCTCAAAACTGCTGTCTGTTTGCACTTTAATTTTTTGTACCTTTATAAGAGCATGCAGTTCCCTTGACTTCATTGTTCCAGGTCAAACTGTACCAGATGGTAACTATCTAGTTTCAGGTGGTGGAACCTTTGAACTAGGATTTTTCAGCCCTGGGAAATCCAAAAGCAGATATTTGGGCATTTGGTACAAGAATATATCTCCTTTAACAGTTGTATGGGTGGCCAACAGAGAAACACCACTCTCTGACACTAGAGGAGTTTTAAAGCTCAATCATCATGGAGTTCTTCTCCTTGTCAATAGCACAAACAGCATTGTTTGGTCTTCCAACTTCACAAGTTCAAGAACAGCAGCAGAGAAGCCAATTGCACAGCTCTTAAACTCAGGAAATCTTGTTGTGAGGGATGGCAATGATAGTGAGGGAAACTTCATTTGGCAGAGTTTTGATTATCCCTGTGATACATTATTGCCTGGAATGAAACTGGGATGGGACAAAGTGAAGGGTTTGAATAGGTTCCTTTCATCTTGGAGAAGTCCAGAGGATCCTGGTCAGGGAGAGCATGTCCTACAAATAGACCCTCGAGGGTTTCCCCAATCAGTTCAATTGAGAGGAAATGTTGTGCAGTTTCGAGCAGGGTCATGGAATGGTCTCTATTTAACTGGATTTCCAGTTCAGAAGATAAATCCAATATACAAACCTGAATTTGTCTTCAATCAGAAAGAGGTGTATTATAAATATGAACTCATGGATGAATCTATTTTCTCAAGAATTATATTGAACCCTTCAGGCATTGGGCAGCGTTTTGTGTGGAGGGGTCAAAGACATGGATGGGAGATTATCTCGGCTAACATGGTAGACCAGTGTGACAATTATGCTTTGTGTGGTGCATACTCTATTTGCAATTTTAGTAGTTCTCATGTCTGTGTTTGCCTGAAAGGATTTGTACCAAGGAATGCACAAGAATGGAATATGTCTTATTGGTCTAATGGGTGTGTTAGAAGGACTTCATTGGATTGTGATAGAAAGGATGGCTTCAAGAAGTATACAGGCATGAAATTGCCAGACACATCTTTTTCTGAGTTTAATAAGACCAAGAACCTTGAGGAATGTAGGAAAACATGTTTAGAAAACTGTTCTTGTACTGCATATGCAGATTTGGACATTCGCAATGGAGGAAGTGGCTGCTTACTTTGGTTTCATGATCTAATTGACATGAAGCAACTCCATCATGGTGGACAAGACCTTTATGTACGAGTCTCTGCTTCTGAGATAGATCATGTGGAGGTTCACGGCTATGGGAATATCAACAAGAAAGAATTAGTAGGAATAACAGTTGGTTCATTCATATTAAACATGGGAATGATATTGGTAATTTTTGGATTATGTGTATGGAAAAGGAAACTTCAAAAGCCAGGGATGACAAATATATATAACAAGAATAATTACTACAATAAACTGAAGAAGGAAGACCTGGATCTACAGATATTTGATTTGTCAGACATAGCAAAAGCCACTGGCAACTTTTCAAGCAGCAACAAACTGGGAGAAGGTGGCTTTGGATCAGTATACAAGGGTATTCTGACAGATGGACAAGAGATAGCAGTGAAAAGGCTCTCTAACAATTCTGGTCAGGGTCTAGAGGAGTTAAAAAATGAAGTTTTGTTGATTGCTAAACTTCAGCACCGTAATCTTGTAAAGCTTCTTGGATGCTGCATTCAAGGAGAAGAGAAAATGTTAATCTATGAATACATGCTGAATAAAAGCTTAGACTACTTTATTTTTGATGAAACCAGAAGAAAAACTTTGGATTGGCATAAGCGATTCAATATCATTGATGGTATTGCTCGGGGACTTCTTTACCTTCATCAAGATTCAAGACTAAGGATTATTCACAGGGATTTGAAAACCAGCAACATTCTACTAGATGCAAATTTGAATCCAAAAATATCAGACTTTGGCCTGGCTCGCACATTTTGGGGAGATCACTTTGTAGCCCAAACAAACAGGATTGCTGGCACATATGGTTACATGCCTCCTGAGTATGCTATGCATGGACATTTCTCCATGAAATCCGATGTGTTCAGTTTTGGTGTAATAGTACTAGAGGTAGTTAGTGGGAGGAGGTCCTGTGGATTTTCAGACCCAGAACACTCCTTTAGTCTTCCAGGACATGCATGGACACTATGGACTGAAAAGAGGCCCTTGCAACTAGTGGATGAAGTCCTAGAACAAATATCTTCTTCATCTGATGTCATAAGGTGTATACAGGTTGGCTTGTTATGTGTGCAACAAAGACCAGAAGATAGACCAGACATGTCATCAGTGGTTCTGATGTTGAACGGTGAGAAATCATTGCCTAAGCCAAAGGTTCCAGCTTTTTACAATGAAAGAGATGTACCTAAAGAAAATTCTCTGTCTGGAAAATTCAAAATGTTCTCCAATAATGATATTTCCCACACTGTTTTAGAGGCAAGGTAG 2505 0.394 MDLMSETIQSSKLLSVCTLIFCTFIRACSSLDFIVPGQTVPDGNYLVSGGGTFELGFFSPGKSKSRYLGIWYKNISPLTVVWVANRETPLSDTRGVLKLNHHGVLLLVNSTNSIVWSSNFTSSRTAAEKPIAQLLNSGNLVVRDGNDSEGNFIWQSFDYPCDTLLPGMKLGWDKVKGLNRFLSSWRSPEDPGQGEHVLQIDPRGFPQSVQLRGNVVQFRAGSWNGLYLTGFPVQKINPIYKPEFVFNQKEVYYKYELMDESIFSRIILNPSGIGQRFVWRGQRHGWEIISANMVDQCDNYALCGAYSICNFSSSHVCVCLKGFVPRNAQEWNMSYWSNGCVRRTSLDCDRKDGFKKYTGMKLPDTSFSEFNKTKNLEECRKTCLENCSCTAYADLDIRNGGSGCLLWFHDLIDMKQLHHGGQDLYVRVSASEIDHVEVHGYGNINKKELVGITVGSFILNMGMILVIFGLCVWKRKLQKPGMTNIYNKNNYYNKLKKEDLDLQIFDLSDIAKATGNFSSSNKLGEGGFGSVYKGILTDGQEIAVKRLSNNSGQGLEELKNEVLLIAKLQHRNLVKLLGCCIQGEEKMLIYEYMLNKSLDYFIFDETRRKTLDWHKRFNIIDGIARGLLYLHQDSRLRIIHRDLKTSNILLDANLNPKISDFGLARTFWGDHFVAQTNRIAGTYGYMPPEYAMHGHFSMKSDVFSFGVIVLEVVSGRRSCGFSDPEHSFSLPGHAWTLWTEKRPLQLVDEVLEQISSSSDVIRCIQVGLLCVQQRPEDRPDMSSVVLMLNGEKSLPKPKVPAFYNERDVPKENSLSGKFKMFSNNDISHTVLEAR. 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05759 834 SMART serkin_6 517 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05759 834 CDD B_lectin 38 160 IPR001480 -
Seca3g05759 834 Gene3D Transferase(Phosphotransferase) domain 1 593 799 - -
Seca3g05759 834 SMART ntp_6 349 428 IPR003609 -
Seca3g05759 834 PIRSF SRK 4 834 IPR024171 GO:0004674
Seca3g05759 834 Pfam PAN-like domain 348 414 IPR003609 -
Seca3g05759 834 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 17 775 - -
Seca3g05759 834 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 482 592 - -
Seca3g05759 834 Gene3D - 28 157 IPR036426 -
Seca3g05759 834 CDD PAN_AP_plant 344 429 - -
Seca3g05759 834 ProSiteProfiles PAN/Apple domain profile. 348 429 IPR003609 -
Seca3g05759 834 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 593 796 - -
Seca3g05759 834 SUPERFAMILY Protein kinase-like (PK-like) 502 788 IPR011009 -
Seca3g05759 834 Pfam S-locus glycoprotein domain 218 326 IPR000858 GO:0048544
Seca3g05759 834 Pfam D-mannose binding lectin 79 186 IPR001480 -
Seca3g05759 834 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 347 428 - -
Seca3g05759 834 ProSitePatterns Protein kinases ATP-binding region signature. 523 545 IPR017441 GO:0005524
Seca3g05759 834 Gene3D Phosphorylase Kinase; domain 1 490 592 - -
Seca3g05759 834 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 191 IPR036426 -
Seca3g05759 834 Gene3D Hepatocyte Growth Factor 345 426 - -
Seca3g05759 834 Pfam Protein tyrosine and serine/threonine kinase 520 786 IPR001245 GO:0004672|GO:0006468
Seca3g05759 834 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672|GO:0006468
Seca3g05759 834 ProSiteProfiles Protein kinase domain profile. 517 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05759 834 SMART blect_4 37 160 IPR001480 -
Seca3g05759 834 ProSiteProfiles Bulb-type lectin domain profile. 31 155 IPR001480 -
Seca3g05759 834 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 157 - -
Seca3g05759 834 CDD STKc_IRAK 523 790 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05759 Seca-Chr3 118381996 118386154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05759 444 803 Receptor kinase-like Gene Family AT4G23190 50.824 1.76e-122 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05759 PK_Tyr_Ser-Thr 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05759 - - lja:Lj3g3v0685950.1 1203.35