Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05757 ATGATGAACTATAGAAACATGTGCATTTGCTCCTTCATTTTATTCTTGTTCGTGAGAATATCCACCTCATTAGACAGCATGACTCCAAGTCAATCCATCCGAGATGGTGAGAGTTTAGTTTCAGCCGGTGGAACTTTTGAAGTTGGATTCTTCAGCCCGGGGAACTCAAAAAGTAGATACTTGGGAATATGGTACAGAGTATCTCATATGACAGTGGTATGGGTAGCCAACCGAGACAAACCACTCAATAATACCTCTGGAGTTCTAGAAGTCAACGATCAAGGAGTTCTTGTGCTCCAAAATGGTTCTGGCAGTACTGTGTGGTCGTCCAATGTAACAAAACAAGCAGACAATATTAATCCAATTGTACAACTATTGGACTCTGGAAATCTTCTTGTGAGAGAGGGCAGTGGCATACTGTGGCAGAGTTTTGATTATCCTTGTGATACTTTATTGCCAGGAATGGAGCTTGGATGGAATCTAGTGACTGGCCATGATAGGTTTCTATCATCTTGGAAAAATGGAGATGATCCTGATCTTGGAGACTATGTGTTTAAAATAGACTATAGAGGCTATCCACAAGCAGTTGAATTGAAGGGAACCGCTATAATGAACAGGGCAGGGCCATGGAATGGCCTAACCTTTTCAGCAAATCCAGTCCAAACAAGCACTCCACAATATGATTCTGACTTTGTTGTGAATCAAAAGGAGATTTTTTTCAAGTCCCAACTCTTAGATAAATCTGCTTTAATCAGATATATATTGACCCCTTCAGGGAATAGGCAGATTTTCCATTGGAAAAGTGAAACAAGCAGCTGGGAGCTGATGTGGTCTCAACCATCAGTTCAATGTGACAATTATGCATTGTGTGGTGCAAACTCAATTTGCAATTCTATCAACAACCCTCAGTGCGCATGCCTCAATGGGTTTGTAAGCAAATATCCGGAAGAATGGAATGTGTCAAATTGGTCTGATGGCTGTGTTCGGGTCACTCCATTGAGCTGTGACAAAGATGGGTTCAGGAAGTACATAGGCATGATTCTGCCTGACACATCTTCTTCTTGGTTTGATAAGACCATGGTCCTGCAGGAATGTGAAGATTTATGCCTGCAAAACTGTTCATGTACAGCATACGCGAATATGGATATAAGTGGTGGAGGAAGTGGCTGCTTGCTTTGGTTTCATGATCTCATTGACATGAGGCAATTCCCTCAAGCTCAAGGGGGACAGGACATTTATATACGATTCCCTCTTTCGGAGCTACAAGATCACTATCAGGACGTGTTAGGCAAGAAGCTTGCAAGCATCATCAGTGGCTGTACTGTGTTCATCATGTGCATAATACTTGGACTGACCATATGTGTATGGAGAAAGAAACTTGCGAAGCCAGTTTTAGGGATGAGAAATCTATTTTATCAAATTCACCACAACTATAAATTAAGGAGAGTAGAGGTAGATCCACCAGCATTTGACTTGCCTCTCATTGTTAAAGCCACTAATAACTTTTCGGGTACCAACAAACTTGGAGAAGGTGGTTTTGGATCCGTATACAAGGGTACACTAATGAATGGGCAAGACATAGCTGTGAAAAGGCTTTCAAAGAACTCTGATCAGGGGTTGGAGGAATTTAAAAATGAAGTTTCATTGATTGCCAAACTCCAGCACCGTAATCTTGTGAATCTTCTTGGTTATTGCATTCAAGGTGGAGAGAAAATGTTGATCTATGAATACATGCCAAACAAGAGCTTGGACTACTTTATTTTTGGTTTGTGA 1773 0.4123 MMNYRNMCICSFILFLFVRISTSLDSMTPSQSIRDGESLVSAGGTFEVGFFSPGNSKSRYLGIWYRVSHMTVVWVANRDKPLNNTSGVLEVNDQGVLVLQNGSGSTVWSSNVTKQADNINPIVQLLDSGNLLVREGSGILWQSFDYPCDTLLPGMELGWNLVTGHDRFLSSWKNGDDPDLGDYVFKIDYRGYPQAVELKGTAIMNRAGPWNGLTFSANPVQTSTPQYDSDFVVNQKEIFFKSQLLDKSALIRYILTPSGNRQIFHWKSETSSWELMWSQPSVQCDNYALCGANSICNSINNPQCACLNGFVSKYPEEWNVSNWSDGCVRVTPLSCDKDGFRKYIGMILPDTSSSWFDKTMVLQECEDLCLQNCSCTAYANMDISGGGSGCLLWFHDLIDMRQFPQAQGGQDIYIRFPLSELQDHYQDVLGKKLASIISGCTVFIMCIILGLTICVWRKKLAKPVLGMRNLFYQIHHNYKLRRVEVDPPAFDLPLIVKATNNFSGTNKLGEGGFGSVYKGTLMNGQDIAVKRLSKNSDQGLEEFKNEVSLIAKLQHRNLVNLLGYCIQGGEKMLIYEYMPNKSLDYFIFGL. 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05757 590 Pfam D-mannose binding lectin 71 173 IPR001480 -
Seca3g05757 590 ProSiteProfiles PAN/Apple domain profile. 335 417 IPR003609 -
Seca3g05757 590 Pfam S-locus glycoprotein domain 206 313 IPR000858 GO:0048544
Seca3g05757 590 CDD B_lectin 30 147 IPR001480 -
Seca3g05757 590 CDD PAN_AP_plant 331 417 - -
Seca3g05757 590 ProSiteProfiles Protein kinase domain profile. 502 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05757 590 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 10 587 - -
Seca3g05757 590 Gene3D - 19 144 IPR036426 -
Seca3g05757 590 SMART ntp_6 335 416 IPR003609 -
Seca3g05757 590 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 178 IPR036426 -
Seca3g05757 590 Gene3D Hepatocyte Growth Factor 333 415 - -
Seca3g05757 590 ProSitePatterns Protein kinases ATP-binding region signature. 508 530 IPR017441 GO:0005524
Seca3g05757 590 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 467 577 - -
Seca3g05757 590 Pfam PAN-like domain 335 400 IPR003609 -
Seca3g05757 590 Pfam Protein tyrosine and serine/threonine kinase 505 587 IPR001245 GO:0004672|GO:0006468
Seca3g05757 590 ProSiteProfiles Bulb-type lectin domain profile. 24 146 IPR001480 -
Seca3g05757 590 SMART blect_4 30 147 IPR001480 -
Seca3g05757 590 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 144 - -
Seca3g05757 590 Gene3D Phosphorylase Kinase; domain 1 468 577 - -
Seca3g05757 590 SUPERFAMILY Protein kinase-like (PK-like) 476 589 IPR011009 -
Seca3g05757 590 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 334 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05757 Seca-Chr3 118230406 118234300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05757 490 588 Receptor kinase-like Gene Family AT4G23230 67.677 4.13e-37 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05757 S_locus_glycop 4.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05757 - - gsj:114373347 727.628