Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05756 ATGGAAAGCTTCAAGGGACTAGTTTTGTGCTTTCTTCTGTTCCACTTCATACCAATCTTCAACACGCTGGAAACCATTGTTCCTGGACAATCTGTCAAAAATAATGAGACTCTAGTTTCAGCAGATGGGACTTTTGAAGCGGGATTCTTCAACTTTGGAGATCCAAATAACCAATATTTTGGCATATGGTACAAGGATATTTCTCCAAGAACAGTTGTGTGGATAGCAAACAGAGATGCCCCACTGGCAAGCTCCTCAGGAGTTTTGAATGTCACTGATGGAGGAAATCTTGTTATTCTTAATGGCACAGGGGCTATAGTTTGGTCCTCCAATGCATCAACAACTGCAAAGAAGCCAATTGTGCAGCTCTTGGAGAATGGAAACCTTGTTGTGAAAGAAGAAAGCAACCCTAAGAATCTTCTGTGGCAAAGTTTTGATCTTCCTGGGGACACTTTGCTCCCTGGGATGAAAATTCGAAGTGACTTAGTAAGTGGTAATTATACATCTCTGGTATCTTGGACAGACACACAAAATCCTGCTGGAGGTGTGTATTCATACCACATAGATACTCATGGTTATCCTCAAGTAGTGATTACAAAGGGAGACACATTATTGTTCAGAGCAGGTTCATGGAATGGCAATATTTTATCTGGAATTCCTTCTGAAACACTATACAAATCCTTTAATTTCTTCTTTGTGATAACTGAGCAGGAAGTTTCTTATGGATATGAACTCTTGAATCAGTCAATTATTTCAAGATACATGCTCACTTCAACCGGCCAAGTGGCACGTTACATGTTATCAGATCAGACAAAGAGTTGGCAGCTTTTCTTTGTTGGCCCTACAGACCAATGTGATAATTATGCCATTTGTGGTGCAAATTCTAATTGTGATGTTAGTAACTCTCCAACATGTGAATGCCTTCAGGGTTTCATCCCCAAATCACAAGAAAAATGGAATTTACAAAAATGGGCTGATGGGTGTGTGCGGAGAGCTAATTTAGATTGTGGCAACAGTGATGGCTTTCTGAAATATACAGGCATGAAGTTGCCAGACACTTCAACCTCATGGTTTAATAAGAGCATGAACCTTGAGGAATGTGAGAAATTCTGTCTGAAAAACTGCTCTTGCACAGCATATGCAAATTTAGATATCAGAAATGGTGGAAGTGGCTGCTTGCTTTGGTTTAATAACATTGTGGACATGAGGAAACTGACCTCTGGAGGACAAGACCTTTACATAAGAGTGGCAGCTTCAGAACTAGACCATGACAAGGGCTTGAACAAGAAGCAGCTTGCAGGAATTCTGGTAGGTTGTTCTATGTTTATTGTGATTATGATAATACTGGGAGTGGCCATACTTCGGAGGAAGAAACAAGAGAAGCCAGGGAATAACCAAATATTTAGCTTTAAGAATCATACTGACAATAAAGAGAATGAAGAAGACATTGACATACCAATGTTTGATTTTTCAATCATATCTAATGCAACTAATAACTTCTCCACTAATAACAAATTGGGAGAAGGTGGATTTGGACCAGTTTACAAGGGTACATTGCCAAATGGACAAGATATTGCCGTGAAGCGGCTTTGCAATAAATCAGGACAAGGACCAAAAGAGTTCATAAATGAAGTTATAATAATTGCCAATCTTCAGCACCGAAATCTTGTGAAACTTCTTGGGTGTTGCATTCAAGATGATGAGAGAATCTTGATTTATGAATTCATGATTAACAGAAGCTTGGACTGCTTTATTTTTGATCAAACTAGAAAAAGTATACTGCATTGGGCTCAACGCATCCAAATTATTTGTGGGATTGCTCGAGGACTTCTCTATCTTCATGTAGATTCTAGAATAAGGATTATCCACAGAGATCTCAAGACCAGCAATATTCTTCTAGATGAAAATATGAATCCAAAAATATCAGACTTTGGTCTTGCTAGACCATTTCGGAGAGATGAAGCTGAATGGGAAACTAAGAGAGTAGTTGGAACTTATGGTTATATTTCCCCTGAGTATGCAGCCCGTGGGTTTATCTCAGTGAAATCTGATGTTTTCAGTTTTGGTGTTATTGTACTAGAGACAATTAGTGGAAAGAGGAACAGGGAATAA 2112 0.3892 MESFKGLVLCFLLFHFIPIFNTLETIVPGQSVKNNETLVSADGTFEAGFFNFGDPNNQYFGIWYKDISPRTVVWIANRDAPLASSSGVLNVTDGGNLVILNGTGAIVWSSNASTTAKKPIVQLLENGNLVVKEESNPKNLLWQSFDLPGDTLLPGMKIRSDLVSGNYTSLVSWTDTQNPAGGVYSYHIDTHGYPQVVITKGDTLLFRAGSWNGNILSGIPSETLYKSFNFFFVITEQEVSYGYELLNQSIISRYMLTSTGQVARYMLSDQTKSWQLFFVGPTDQCDNYAICGANSNCDVSNSPTCECLQGFIPKSQEKWNLQKWADGCVRRANLDCGNSDGFLKYTGMKLPDTSTSWFNKSMNLEECEKFCLKNCSCTAYANLDIRNGGSGCLLWFNNIVDMRKLTSGGQDLYIRVAASELDHDKGLNKKQLAGILVGCSMFIVIMIILGVAILRRKKQEKPGNNQIFSFKNHTDNKENEEDIDIPMFDFSIISNATNNFSTNNKLGEGGFGPVYKGTLPNGQDIAVKRLCNKSGQGPKEFINEVIIIANLQHRNLVKLLGCCIQDDERILIYEFMINRSLDCFIFDQTRKSILHWAQRIQIICGIARGLLYLHVDSRIRIIHRDLKTSNILLDENMNPKISDFGLARPFRRDEAEWETKRVVGTYGYISPEYAARGFISVKSDVFSFGVIVLETISGKRNRE. 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05756 703 CDD B_lectin 30 148 IPR001480 -
Seca3g05756 703 SMART serkin_6 500 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05756 703 ProSiteProfiles PAN/Apple domain profile. 336 417 IPR003609 -
Seca3g05756 703 Pfam D-mannose binding lectin 71 173 IPR001480 -
Seca3g05756 703 PIRSF SRK 2 703 IPR024171 GO:0004674
Seca3g05756 703 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 335 416 - -
Seca3g05756 703 Pfam S-locus glycoprotein domain 206 315 IPR000858 GO:0048544
Seca3g05756 703 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 145 - -
Seca3g05756 703 Gene3D Phosphorylase Kinase; domain 1 473 575 - -
Seca3g05756 703 Gene3D Hepatocyte Growth Factor 333 414 - -
Seca3g05756 703 Gene3D Transferase(Phosphotransferase) domain 1 576 703 - -
Seca3g05756 703 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Seca3g05756 703 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 576 667 - -
Seca3g05756 703 SMART blect_4 29 148 IPR001480 -
Seca3g05756 703 CDD PAN_AP_plant 333 417 - -
Seca3g05756 703 SMART ntp_6 337 416 IPR003609 -
Seca3g05756 703 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 178 IPR036426 -
Seca3g05756 703 ProSiteProfiles Protein kinase domain profile. 500 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05756 703 Gene3D - 19 145 IPR036426 -
Seca3g05756 703 Pfam PAN-like domain 336 402 IPR003609 -
Seca3g05756 703 Pfam Protein kinase domain 501 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05756 703 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 464 575 - -
Seca3g05756 703 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
Seca3g05756 703 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 11 702 - -
Seca3g05756 703 SUPERFAMILY Protein kinase-like (PK-like) 482 700 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05756 Seca-Chr3 118164064 118167987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05756 425 701 Receptor kinase-like Gene Family AT4G23190 53.430 7.52e-96 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05756 Pkinase 7.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05756 - - ccaj:109805721 1175.61