Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05752 ATGGAGATCCAGCACTGTCAATCAATGAAAAATCTTTCTCTTATGTTTGTAGTTACTAAGATTCTGTTACTCTTTTTTCATATAACAAGTGCAGCTGACTCCATATCTCGATTTCAATCACTTTCTGAAGGCAAGACCTTAGTTTCTGAAGATGGAAGCTTTGAATTGGGTTTCTTCAGTCCAGGAAGTTCTGCAAACCGTTACTTGGGAATATGGTACAAGTCAATACCAGTTAAAACTGTTGTCTGGGTCGCCAATCGAGCCAACCCAGTGAAGGACAATTCTAGCATGTTGCAAATAAACAGTGAGGGGAATCTTGTGCTTGTTAACAAGAATGGGACTGTGGTTTGGTCAGCAGACACCAAAAAGAAGATTCTGAATCCCATTTTCCAGCTCTTAAATTCAGGGAATTTAGTACTGAGAGATGAGAAAGACGAAGATAATGAAAACTACTTGTGGCAAAGCTTTGATTATCCTGGTGATACACTGTTACCTGGAATGAAGCTGGGTTGGGACTTAAAAACTGGTCATGAAAGGCGTGTATCTGCTTGGAAGAACTGGGATGATCCATCACCTGGTGATTTTACTTGGGGTATCTCACTTGAAGGTTTTCCTCAAGTAATGATGTGGAAAGGCTCAAAATTGTACTACCGTGGTGGTTCATGGAATGGCCTTGGATTCACTGGTGCCCCAGAATTGAAGACCAATCCAGTTTTTGACTTTAAATTCGTTTCCAACAAGGATGAGGTTTACTACACATATACCCTCAGGAATAAGTCAATGATTTCAAGGATTGTTATGAACCAAACAAGCTCCACTCGCCAGAGGTACATATGGATCCAAGAAGCTCAAAGTTGGAGGCTTTATGCTTCTGTGCCTAGAGATAACTGTGACTTTTACAATCTTTGTGGACCATATGGAAATTGCATCATAGGTGACTCTCCAGTGTGTCAGTGTTTAACAGGGTTTAAGCCAAAATTACCAGGAAATTGGGACATGATGGACTGGACTCAAGGGTGTTTACTCACTGAACAATGGAGCTGTGAGGATAAGAGTCAACATGGGTTTCTGAAAGTTAGTGGGCTGAAATATCCAGATACTTCACATTCTTGGGTTAATGAGAGTATGGATCTCAATGAATGCAGGAATAAATGCTTGGAGAATTGTTCATGTAAAGCTTATGCAAATTCAGATGTTAGTGGTGGAGGTAGTGGCTGTTTGATATGGTTCGGTGATCTCAGGGATATTAGACAGTTTTCTGGTGATGGACGAGATCTATATATACGAACCAAAACTTCAGAGTTAGGTAAGGTCTTGGCATTGGCTCATTCAGCCGGGAAAGGAGAACATAACATGAAGGTGGTAGCAATAATCATCAGTGTTGCCCCAGTTCTTACAGTGATTCTGGTTTTTTACTATGTCTGCAAGAGAATGAGAAAGTTCGGAGCTGATGAAACAGAGAAGAACTTGATGATAGAGAATAATGAGGAAGGCGGGGAAGAAGACTTGGAGCTTCCTATATTTGATCTTGCTACGATTGTCAAAGCAACTGATGGTTTCTCAATTAACAATAAGCTTGGAGAAGGTGGATTTGGGGCTGTATACATGGGTACCCTAACAGATGGAAAAGAAATTGCTGTGAAGAGGCTCTCACAGGGTTCTGGACAAGGGTTTACTGAATTTAAGAATGAAGTCATATTGATTGCTAAACTTCAGCATCGAAACCTAGTTAAGCTTCTTGGTTGCTGCATTCAAGGAGAGGAGAAGATGCTAATCTATGAATACATGCCCAACAAAAGCCTAGACTCCTTTATCTTTGATCATACAAAATGCAAAGTTTTGGATTGGTCCAAACGCTTCAACATTATTTGTGGAATTGCTCGAGGACTTGTGTATCTTCATCAAGATTCTAGGTTGAGGATAATACATAGAGACCTTAAAGCAAGCAATGTCTTACTTGATAATGAGTTGAACCCAAAAATATCTTATTTTGGCATGGCTAGAACTTTTGGGGGAGATCAGACTGAAGGAAACACAAGGAGGGTGGTTGGAACATATGGTTATATGGCACCTGAATATGCCATTCATGGGCTATTTTCAGTAAAATCTGATGTCTTCAGCTTTGGTGTATTATTGCTGGAGATACTAAGTGGGAAGAAGAACAGAGGATTTTCCCATTCAAATAACAGTATAAACCTTATTGAACATGCATGGAGATTTTGGAAAGAAAACAGACCCATTGACTTGATAGATTTGTGTATGGAGAATTCATCTGATCTATCAGAAGCATTGCGTTGCATCCATATCAGTCTTCTATGTGTCCAACAACATCCTGATGATAGGCCAAACATGTCAAATGTAGTTGTGATGTTGGGCAGCGAGAGTTCCTTGCCTCAACCAAAGGAGCCTGCTTTCCTTATGGAGAAGTTCTTTCTTGAAGCAGATTCTTTTAGCAAGCATCAATTTTCTTCAACCAATGAAGTGAGCGTTACCATATTAGAGCCCCGGTAG 2511 0.4022 MEIQHCQSMKNLSLMFVVTKILLLFFHITSAADSISRFQSLSEGKTLVSEDGSFELGFFSPGSSANRYLGIWYKSIPVKTVVWVANRANPVKDNSSMLQINSEGNLVLVNKNGTVVWSADTKKKILNPIFQLLNSGNLVLRDEKDEDNENYLWQSFDYPGDTLLPGMKLGWDLKTGHERRVSAWKNWDDPSPGDFTWGISLEGFPQVMMWKGSKLYYRGGSWNGLGFTGAPELKTNPVFDFKFVSNKDEVYYTYTLRNKSMISRIVMNQTSSTRQRYIWIQEAQSWRLYASVPRDNCDFYNLCGPYGNCIIGDSPVCQCLTGFKPKLPGNWDMMDWTQGCLLTEQWSCEDKSQHGFLKVSGLKYPDTSHSWVNESMDLNECRNKCLENCSCKAYANSDVSGGGSGCLIWFGDLRDIRQFSGDGRDLYIRTKTSELGKVLALAHSAGKGEHNMKVVAIIISVAPVLTVILVFYYVCKRMRKFGADETEKNLMIENNEEGGEEDLELPIFDLATIVKATDGFSINNKLGEGGFGAVYMGTLTDGKEIAVKRLSQGSGQGFTEFKNEVILIAKLQHRNLVKLLGCCIQGEEKMLIYEYMPNKSLDSFIFDHTKCKVLDWSKRFNIICGIARGLVYLHQDSRLRIIHRDLKASNVLLDNELNPKISYFGMARTFGGDQTEGNTRRVVGTYGYMAPEYAIHGLFSVKSDVFSFGVLLLEILSGKKNRGFSHSNNSINLIEHAWRFWKENRPIDLIDLCMENSSDLSEALRCIHISLLCVQQHPDDRPNMSNVVVMLGSESSLPQPKEPAFLMEKFFLEADSFSKHQFSSTNEVSVTILEPR. 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05752 836 Pfam PAN-like domain 348 416 IPR003609 -
Seca3g05752 836 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 596 799 - -
Seca3g05752 836 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 190 IPR036426 -
Seca3g05752 836 Pfam Protein tyrosine and serine/threonine kinase 521 790 IPR001245 GO:0004672|GO:0006468
Seca3g05752 836 Gene3D Transferase(Phosphotransferase) domain 1 596 802 - -
Seca3g05752 836 ProSiteProfiles EGF-like domain profile. 293 329 IPR000742 -
Seca3g05752 836 ProSiteProfiles Protein kinase domain profile. 520 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05752 836 Pfam Domain of unknown function (DUF3403) 794 836 IPR021820 GO:0004674
Seca3g05752 836 PIRSF SRK 6 836 IPR024171 GO:0004674
Seca3g05752 836 Gene3D Phosphorylase Kinase; domain 1 494 595 - -
Seca3g05752 836 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 347 430 - -
Seca3g05752 836 SUPERFAMILY Protein kinase-like (PK-like) 504 791 IPR011009 -
Seca3g05752 836 CDD STKc_IRAK 526 791 - -
Seca3g05752 836 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 484 595 - -
Seca3g05752 836 ProSiteProfiles PAN/Apple domain profile. 348 431 IPR003609 -
Seca3g05752 836 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 21 782 - -
Seca3g05752 836 ProSiteProfiles Bulb-type lectin domain profile. 32 153 IPR001480 -
Seca3g05752 836 SMART blect_4 38 159 IPR001480 -
Seca3g05752 836 Gene3D Hepatocyte Growth Factor 348 427 - -
Seca3g05752 836 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 28 156 - -
Seca3g05752 836 CDD PAN_AP_plant 347 430 - -
Seca3g05752 836 SMART serkin_6 520 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05752 836 Pfam D-mannose binding lectin 80 185 IPR001480 -
Seca3g05752 836 ProSitePatterns Protein kinases ATP-binding region signature. 526 548 IPR017441 GO:0005524
Seca3g05752 836 SMART ntp_6 351 430 IPR003609 -
Seca3g05752 836 Gene3D - 26 156 IPR036426 -
Seca3g05752 836 Pfam S-locus glycoprotein domain 217 326 IPR000858 GO:0048544
Seca3g05752 836 ProSitePatterns Serine/Threonine protein kinases active-site signature. 641 653 IPR008271 GO:0004672|GO:0006468
Seca3g05752 836 CDD B_lectin 39 159 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05752 Seca-Chr3 118123433 118127189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05752 451 808 Receptor kinase-like Gene Family AT4G23230 53.760 3.60e-129 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05752 PK_Tyr_Ser-Thr 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05752 - - cave:132173746 1117.06