Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05738 ATGGACATGTTGCATACTCTAATTATGTTAATCATTTTTTATTTTCTTTTTCCATATACAATTGTGTCAATTTCAGCCGATACCTTATTGTTAGGGAGAATAAAGAAGCTTCAAATTACAGTGAGAAATAACCAAGATATCCCAACTCAGGGGACTAACAACTCTGGTGTGTTGGATGATAGCTACTGTAGCTATCACAGAGTTTGTGGAGCTAATGGGAATTGTGACCTTACAAAGGCACCAGCTTGTGTCTGTTTAGATGGATTCACACCCAAGTCACCAAGTGGCTGGGATTCCCTGGACTATTCACAGGGGTGTGAAAGGGAAAAAGCATTGAATTGTAGTACAACAAATGTGTTCTTCAAATATGGTGTGTTCCAAGAGCCTAGTGGCACATATTCTTTGCTAAATCAAAGCTTGGCAGAGGAGGATTGCAGAGCAAAATGCTTGAGTAACTGTTCTTGTGTGGCTTATACCATAAGGAATGGCTGCAAATTGTGGACTGGTGATCTGTTTGATGTTAGGGTCATCAATGGAGGGCAGGATTTGTATATTCGAATGCCAGCAGCATCAGAGCTAGCTGATGAAGAGGAAAATCATGGGCGTCATGAGGGAAAGATAGTGGGAGTAATAATTGGGAGCACTGTTGTTATAATTTCTGGGATGGTCTTTTGTGGCTGCTACTTGCACAGGAGAAGGTTTAAGTTAAAAGTATTAGGAAATATAAGGACAAGTGAGATAGTTAGTCATATCAATGAACAAGAAAAAGGAGATCTGGAGCTTCCATTATTTGACCTATCAAGAATAACTGCTGCCACTGATAACTTTTCAGTCAATAACAAGCTAGGAGAAGGTGGTTTTGGACCTGTATACAAGGGTACATTACAAGATGGGCGAGAAATTGCTGTTAAGAGGCTTTCAAGTAGTTCTGGGCAGGGGCTAAATGAATTAAAAAATGAAGTAATACTGATAGCCAAACTTCAGCATCGTAATCTTGTAAAGCTTCATGGATGTTGCATCCAAGAGGGAGAGAAATTGCTGATATATGAATACATGCCTAACAGAAGCCTAGATTATTTTATTTTTGATCAAACACGTGGAAAAATCTTGGATTGGCCTAAGCGTTTTAAGATTATTTGTGGGATTGCTAGGGGCCTGCTATATCTACATCAGGATTCTAGGCTGAGAGTTATACATAGAGATCTCAAAGCAAGTAATGTTTTGCTGGACAGTGAGATGGAGCCAAAGATCTCAGATTTTGGTTTGGCTAGAAGTTTTGTTGGTGGAGATCATAGCAAAGGAAATACAAATAGAGTAGTTGGTACTTTTGGATATATGGCCCCAGAATATGCTGTTAATGGACACTTTTCAGTGAAATCTGATGTTTTTAGCTTTGGGGTTTTGTTACTTGAGATAATAAGTGGGAAAAAAAATAGAGGGCTCTATTATCCTGATGACAACATGAACCTATTTGGACATGCATGGAATTTATGGGAACAAGGAAGGTCGTTAGAATTGATCAATGAATGCCTCAAAGACTCTTGGACATTATCTGAAGTGCAACGCTGCATCCATATTAGCCTGTTGTGTGCACAGCAGCATCCCCAGGACAGGCCAAGTATGCCATCTGTGGTTCTGATGTTGGGTAGTGAAATTGACTTGCCTCAACCCAAATTTCCTAGTTTTGTCATTGGAGAACCTTCTGATGGCATAAGTTCCTCCTCTAGTAAAAATAAATTGAGCATTACAGAGCTTGAAGCTAGATAA 1767 0.3945 MDMLHTLIMLIIFYFLFPYTIVSISADTLLLGRIKKLQITVRNNQDIPTQGTNNSGVLDDSYCSYHRVCGANGNCDLTKAPACVCLDGFTPKSPSGWDSLDYSQGCEREKALNCSTTNVFFKYGVFQEPSGTYSLLNQSLAEEDCRAKCLSNCSCVAYTIRNGCKLWTGDLFDVRVINGGQDLYIRMPAASELADEEENHGRHEGKIVGVIIGSTVVIISGMVFCGCYLHRRRFKLKVLGNIRTSEIVSHINEQEKGDLELPLFDLSRITAATDNFSVNNKLGEGGFGPVYKGTLQDGREIAVKRLSSSSGQGLNELKNEVILIAKLQHRNLVKLHGCCIQEGEKLLIYEYMPNRSLDYFIFDQTRGKILDWPKRFKIICGIARGLLYLHQDSRLRVIHRDLKASNVLLDSEMEPKISDFGLARSFVGGDHSKGNTNRVVGTFGYMAPEYAVNGHFSVKSDVFSFGVLLLEIISGKKNRGLYYPDDNMNLFGHAWNLWEQGRSLELINECLKDSWTLSEVQRCIHISLLCAQQHPQDRPSMPSVVLMLGSEIDLPQPKFPSFVIGEPSDGISSSSSKNKLSITELEAR. 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05738 588 Pfam Protein tyrosine and serine/threonine kinase 278 545 IPR001245 GO:0004672|GO:0006468
Seca3g05738 588 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 241 351 - -
Seca3g05738 588 ProSiteProfiles Protein kinase domain profile. 276 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05738 588 ProSitePatterns Serine/Threonine protein kinases active-site signature. 397 409 IPR008271 GO:0004672|GO:0006468
Seca3g05738 588 SMART ntp_6 115 187 IPR003609 -
Seca3g05738 588 Gene3D Transferase(Phosphotransferase) domain 1 352 554 - -
Seca3g05738 588 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 352 556 - -
Seca3g05738 588 ProSiteProfiles PAN/Apple domain profile. 114 188 IPR003609 -
Seca3g05738 588 MobiDBLite consensus disorder prediction 567 582 - -
Seca3g05738 588 Gene3D Phosphorylase Kinase; domain 1 238 351 - -
Seca3g05738 588 CDD STKc_IRAK 282 548 - -
Seca3g05738 588 MobiDBLite consensus disorder prediction 567 588 - -
Seca3g05738 588 SMART serkin_6 276 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05738 588 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 65 572 - -
Seca3g05738 588 Pfam PAN-like domain 114 174 IPR003609 -
Seca3g05738 588 CDD PAN_AP_plant 112 188 - -
Seca3g05738 588 SUPERFAMILY Protein kinase-like (PK-like) 260 556 IPR011009 -
Seca3g05738 588 Pfam S-locus glycoprotein domain 60 93 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05738 Seca-Chr3 117552592 117562330 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05738 264 564 Receptor kinase-like Gene Family AT4G23230 60.265 4.45e-127 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05738 PK_Tyr_Ser-Thr 8.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05738 - - aip:107610641 740.339