Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05737 ATGCTTATAATTAGAGACACCCTGCAAAGAGGTTTCTATATCCTAAACATGCAAGGAAAGGGAAGCTTTCACTTCTTACCAATTACCTTCTACCTTCTCTTTTTCATCTCCAAAATCTTTGCTGCAACTGACACCATTTCTCAGTCGCAGTCCCTCACTGAAAACCAGACCTTGGTTTCCAAAAACGGAAACTTTGAGCTTGGTCTCTTCACTCCCGGTACCTCTAGCAACCGTTATTTGGGCATTTGGTACAAAGACATCCCAATCAAAACCGTTGTATGGGTTGCAAACAGAGAAAAACCCACCAAAGACCTCTCTGTTCTCTTGCTGATAAACACCACCACCCAAAACATACTTCTTCTTGGTCAGAACAAGAGTGTCCTATGGTCTATAACCCCATCAAGAAAAGCTCATAACCCAGTTCTTCAACTCTTGGATTTTGGAAATCTTGTGCTAAAAGAGCAGAATAATGAGAATAATCCAGAGGAGTATCTATGGCAGAGCTTTGACTACCCTTGTGACACACAGTTGCCAGGGATGAAGCTTGGGATAGACTTAAGAACTGGTTTTGATCGACGCCTCACAGCATGGAAGAATGAAAATGACCCTTCACCTGGAAACATGACATGGGGCTTGTATCTCACCAATTGGCCTGAACCCATGCAGTGGATAGGGTCAAGAAAGTACTTTAACAGTGGTCCATGGAATGGAATTCAATATAGTGGCAAACCAACCCTGAAGCCTCACCCAGTTTTTGATTTCATTTATTTCTCTGATGAGAATGAAGTGTACTACATGTTCCGCCTTGTGAACAACTCTGTCAAAGCTAGGATGGTGTTGAATCAAACCAGCTATGTTCGCCAGCATTCTGTTTGGGTGGAAGCAGAGCAAAGATGGAAGGTGTATGGTTCACTGCCAAGAGATTTTTGTGATAAGTATGGTGCTTGTGGTCCTAATGGGAATTGTGATGAGAACAAGTTACCCAGTGCTTGTGATTGTTTGAAAGGGTTTAAGCCTAAATCACCTGTGGCATGGAATGGAATGGAGTATTCAGAAGGGTGTGTACGTGATAGACCACTGAACTGCAAAAATGATGGGTTTTTAAAGTATGTTAAGATGAAAGTGCCTGATACAGAATATAGTTGGTTGAACCAGAACATGACTCTGTTGGAGTGCAGAGCTAAATGCTTGAGCAATTGTTCTTGTACTGCTTATACAAACTCAGATATCAGAGGAGAAGGGAGTGGTTGTGCTTTGTGGTTTGGTGATCTTAATGACTTAAGGGTTCAACCGGATGCAGGGCAGGATCTGTATGTTAGAGTGCCTGCTTCTGAGTTGGAGACAAGCAATGGACGCAAGGTCAAGATAGGAATTGCAGTTGGAAGCACCATTGCAATATTATGTGGCCTGCTCTTAGCTTTCTATTTCATATGCAGAAGAAAGGCCACTACAAAAATAAAATTAGAAAATGTTGCAGTAATAGACCATTTCAAAGAAGAACAGGAGGAGGAAGATCTGGAGCTTCCATTGTTTGACCTATCCAGTATAGCTCATGCCACAGATAACTTTTCAAACAGCATCAAGCTTGGAGAAGGTGGTTTTGGACCTGTATACAAGGGAACATTGGAAAATGGACAAGAAATTGCTGTTAAAAGACTTTCCAGAGGTTCTGGACAAGGGCTGAAGGAATTTAAAAATGAAATTAAATTAATAGCCAAACTTCAACACCGTAATCTTGTGAGGCTTTATGGATGTTGCATTCAGGATGAAGAGAAGTTGTTAATATATGAATACATGGCAAACAAAAGCTTGGATTTCTTTGTATTTGATCAAACACAGAGAATGCTGTTGGATTGGCCTAAGCGCTTCAATATAATTTGTGGTGTTGCAAGGGGCCTTCTCTATCTTCATCAGGACGCCAGACTCAGAATCATTCATAGAGATCTCAAAGCAAGTAACATCTTACTTGATAATGAGATGAACCCAAAGATCTCAGACTTTGGCCTGGCTAGAATTTTGGGAGGAGACCAGAGTGCAGCAAATACACATAGGGTGGCTGGAACTTTTGGATACATGGCACCTGAATATGCAATAGATGGGAACTTCTCAGTGAAATCTGATGTCTTTAGCTTTGGCATTTTGTTGCTGGAGATAGTATCTGGAAAGAAAAATATAGGAAACCGTCATCAAGAGGAAAGTAAAAACCTTATTGGACATGCATGGGATTTGTGGATTGATGGGAGGCCTTTAGAGTTAATTGGTGAATATTCCAAAGATTCTTGCAATCTCTCTGAAGCACTGCGCTGCATCCATATCAGTCTTCTGTGTCTGCAGCAGCATCCACATGACAGGCCTAGCATGTCTTCTGTTGTTATGATGTTAGGTAGTGAAATTGGCTTGCCTCAGCCCAAACCACCAGCTCTATTTGTTGGAGAATATAAACATCAGGAATATTCTTCATCATATAAAAATGAGTTCCCTTCTGTCAATGAAGTGAGTATTTCACTTTTAGAAGCTCGTTAG 2523 0.4114 MLIIRDTLQRGFYILNMQGKGSFHFLPITFYLLFFISKIFAATDTISQSQSLTENQTLVSKNGNFELGLFTPGTSSNRYLGIWYKDIPIKTVVWVANREKPTKDLSVLLLINTTTQNILLLGQNKSVLWSITPSRKAHNPVLQLLDFGNLVLKEQNNENNPEEYLWQSFDYPCDTQLPGMKLGIDLRTGFDRRLTAWKNENDPSPGNMTWGLYLTNWPEPMQWIGSRKYFNSGPWNGIQYSGKPTLKPHPVFDFIYFSDENEVYYMFRLVNNSVKARMVLNQTSYVRQHSVWVEAEQRWKVYGSLPRDFCDKYGACGPNGNCDENKLPSACDCLKGFKPKSPVAWNGMEYSEGCVRDRPLNCKNDGFLKYVKMKVPDTEYSWLNQNMTLLECRAKCLSNCSCTAYTNSDIRGEGSGCALWFGDLNDLRVQPDAGQDLYVRVPASELETSNGRKVKIGIAVGSTIAILCGLLLAFYFICRRKATTKIKLENVAVIDHFKEEQEEEDLELPLFDLSSIAHATDNFSNSIKLGEGGFGPVYKGTLENGQEIAVKRLSRGSGQGLKEFKNEIKLIAKLQHRNLVRLYGCCIQDEEKLLIYEYMANKSLDFFVFDQTQRMLLDWPKRFNIICGVARGLLYLHQDARLRIIHRDLKASNILLDNEMNPKISDFGLARILGGDQSAANTHRVAGTFGYMAPEYAIDGNFSVKSDVFSFGILLLEIVSGKKNIGNRHQEESKNLIGHAWDLWIDGRPLELIGEYSKDSCNLSEALRCIHISLLCLQQHPHDRPSMSSVVMMLGSEIGLPQPKPPALFVGEYKHQEYSSSYKNEFPSVNEVSISLLEAR. 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05737 840 SUPERFAMILY alpha-D-mannose-specific plant lectins 92 203 IPR036426 -
Seca3g05737 840 SMART ntp_6 362 441 IPR003609 -
Seca3g05737 840 Pfam Protein tyrosine and serine/threonine kinase 528 793 IPR001245 GO:0004672|GO:0006468
Seca3g05737 840 Pfam Domain of unknown function (DUF3403) 800 840 IPR021820 GO:0004674
Seca3g05737 840 PIRSF SRK 19 840 IPR024171 GO:0004674
Seca3g05737 840 Pfam PAN-like domain 362 427 IPR003609 -
Seca3g05737 840 ProSitePatterns Serine/Threonine protein kinases active-site signature. 644 656 IPR008271 GO:0004672|GO:0006468
Seca3g05737 840 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 31 785 - -
Seca3g05737 840 ProSiteProfiles Protein kinase domain profile. 523 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05737 840 Pfam D-mannose binding lectin 91 198 IPR001480 -
Seca3g05737 840 Gene3D Phosphorylase Kinase; domain 1 496 598 - -
Seca3g05737 840 ProSiteProfiles Bulb-type lectin domain profile. 43 165 IPR001480 -
Seca3g05737 840 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 39 169 - -
Seca3g05737 840 Pfam S-locus glycoprotein domain 230 341 IPR000858 GO:0048544
Seca3g05737 840 SMART serkin_6 523 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05737 840 CDD B_lectin 49 172 IPR001480 -
Seca3g05737 840 CDD PAN_AP_plant 359 442 - -
Seca3g05737 840 SMART blect_4 49 172 IPR001480 -
Seca3g05737 840 Gene3D - 37 169 IPR036426 -
Seca3g05737 840 SUPERFAMILY Protein kinase-like (PK-like) 506 823 IPR011009 -
Seca3g05737 840 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 599 802 - -
Seca3g05737 840 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 488 598 - -
Seca3g05737 840 ProSiteProfiles PAN/Apple domain profile. 362 442 IPR003609 -
Seca3g05737 840 CDD STKc_IRAK 529 794 - -
Seca3g05737 840 Gene3D Transferase(Phosphotransferase) domain 1 599 799 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05737 Seca-Chr3 117515567 117519478 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05737 454 809 Receptor kinase-like Gene Family AT4G23190 52.222 5.69e-124 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05737 PK_Tyr_Ser-Thr 8.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05737 - - aip:107610641 1150.19