Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05736 ATGAGACAAGCTGGTGCATATTCAGGGTTGTTGTGTGGTGGCATATCAGGAAGGACAGGTCCTCACTCATTGCCCTTGGCAAGGATCAAGAAGATCATGAAGAAATCTGGGGAGGACGTTAAGATGATATCAGGGGAGGCTCCAATTGTTTTCTCTAAGGCTTGTGAACTCTTCATTGAGGAGCTTACTAGAAGGTCCTGGATCATGGCCATCCAAGGCAAAAGGAGAACTTTGCACAAAGAGGATTTGGCCTCAGCTGTTATAGCCACTGATATTTTCGACTTTTTGATCACTTTGGTTTCCAATTCTAGCAGCCCTTTAGTTGGTGGTGCTGCCACTGATACCACTGTCATGCAAATGGAAACTATGGATTACTCTTAA 381 0.4462 MRQAGAYSGLLCGGISGRTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWIMAIQGKRRTLHKEDLASAVIATDIFDFLITLVSNSSSPLVGGAATDTTVMQMETMDYS. 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05736 126 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 22 104 - -
Seca3g05736 126 FunFam Nuclear transcription factor Y subunit C-3 15 101 - -
Seca3g05736 126 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Seca3g05736 126 Gene3D Histone, subunit A 15 102 IPR009072 GO:0046982
Seca3g05736 126 SUPERFAMILY Histone-fold 16 96 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05736 Seca-Chr3 117514160 117514540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05736 22 100 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.354 6.05e-33 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Seca3g05736 CBFD_NFYB_HMF 1e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05736 - - gmx:100820378 217.238