Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05735 ATGGGTGTTATGTCTTTCATGGGTATCATTTTTCTTGCTTATCTTATACTTGTCTATCATTCTCAAGTTTCCTTAGCAATTGACTCCATTTCTCAGTCCCTGACCTTAAGAGATGATGGCAACACCACCTTAGTTTCCAAAGGTGGAACCTTTGAACTTGGATTCTTCACCCCAGGAAATTCCCAGAAACGTTACTTGGGGATTTGGTACAAGAAAATCCCAATTCAAACAGTGGTTTGGGTTGCAAACAGGGTCAATCCAATCAATGATTCATCTAGCACAATCTTAAGATTAAACTCTAGTGGGAGCCTTGTCCTCTCCCAGAATGACACTGTTGTTTGGTCTACAACCCCTCTGAGAAAACCAGAGAGTCCAATTGCCCTGCTCTTAGATTCTGGCAATCTTGTGGTAAGAGATGAGAAAGAAACAAACACAGAAGAAGCATACTTGTGGCAAAGCTTTGATTACCCAACTGACACTTTCTTACCTGAAATGAAGTTTGGTTGGGACTTCAGAATTGGTCTTAATAGGAATCTCACAGCTTGGAAGAGTCCTGATGATCCATCTCCGGGAGATTTTTCTTTTGGTATGGTGCCTCATAACTATCCTGATGCATATATGATGAAGGGTGGCAAAAAGTTCTACCGAAGTGGACCATGGAATGGCCTTCATTCAAGTGGTTCACCACAAGTAAGGACTAACCCCATTTATGACTTTAGGTTTGTTTTCAATAAGGATGAACTTTACTACACATATAGCCTCAAGAACTCATCTGTGATCTCAAGATTAGTATTGAATGGAACAGCCAATGTTCGTAGACGTTATGTGTGGATTGAATCAGCACAAAGATGGGAGATTTACACATCAGTGCCATTGGACTTGTGTGACACTTATGCCCTTTGTGGAGCTTACGCAAATTGTATTATCACAGATTCACCAGTGTGCCAATGTATGGAAGGTTTTAAGCCTAAGTCACCTCAAGCATGGTACTCAATGGATTGGTCTCATGGATGTGTCCGAAATAAGCCATTAAGCTGCAAGGATAAAGAGAAAGATGGGTTTATGAAATTGAGTGGTCTGAAAGTGCCTGATACTACACATTCTTGGTTGGATGAGAAAATTGGTTTAGAGGAATGTAGAGCCAAGTGCTTGGATAACTGTTCTTGTATGGCCTATGCAAATGCAGATGTTAATGGAAAGGGGAGTGGCTGTGCTATGTGGTTTGGTGATCTAATTGACATTAGACAGTTTGCATCTGGAGGCCAGGATTTATATGTTCGAATGGATGCTTCAGAATTAGAACATGCCAATGATGGCCACAAGAAGGGAGTCATAGTGGCAGTAATTGTTTTTCTGGTAGTGGCAGCAGTTTCTGGTATACTCATACTTGGTTGGTGTTATAAAAAGAAATCACGCACCAATATCAAAGAGAAATCAGAGTTCAGTATCAATAGAGATCATAACAGTGGAATGCAAGTGGATGATATGGATCTACCTGTCTTTGACTTGTCAACAATAGCTAAGGCCACTAGCAACTTCACAATCAACAACAAAATTGGAGAAGGTGGTTTTGGACCTGTATACAGGGGAATCCTAGCAGATGGGGTGGAAATTGCTGTGAAAAGGCTTTCAACAAGTTCAGGTCAAGGATTGAACGAGTTCAAGAATGAAGTAAAATTGATTGCAAAACTTCAACATCGCAATCTTGTAAAACTTCTTGGATGTTGCCTTGAAGGAGAGGAAAAAATGTTGGTTTATGAATACATGCCTAATGGTAGCCTGGACTCGTTTATTTTTGATCAGCAAAGAAGTGAATTACTAGACTGGTCAAAGCGTTTCCACATTATATGTGGAATTGCTAAGGGCCTTCTCTATCTTCATCAGGATTCCAGACTAAGGATTATTCACAGAGATCTCAAAGCAAGTAATGTTTTACTTGATAATGAGTTGAATCCCAAAATTTCAGATTTTGGTATGGCTAGAATTTTTGGAGGAGATCAGAAAGAAGGAAACACAAAGAGAATAGTTGGAACTTATGGCTACATGGCACCAGAATATGCAACTGATGGGCTATTTTCAGTGAAGTCTGATGTTTTCAGCTTTGGAATTTTGTTGATGGAGATTATATCTGGGAAGAGAAGTAGAGGATATTATAATCAGAACCACAACCAGAATCTCATAGGCCATGCATGGAAACTCTGGAAAGAAGGAAGGCCACTGGAACTTATTGATAAAAGCCTAGGTGACTCTTGTTCTCTATCACAAATATTGCATTGCATTCATATTAGTCTCTTGTGTGTTCAACAGTACCCTGAGGATAGGCCTGGAATGTCATGTGTGCTCCTAATGTTAGTGAGTGAGTTTGAATTGCCTGAGCCCAAACAGCCAGGATTCTTTGGAAAAGATTCAAGTGAAGCAGATTCCTCCACAAGTAAGCAGCAACTGAGTTCAACAAATGAAATAACAATTACCCTTTTAGAAGCCAGATGA 2490 0.3996 MGVMSFMGIIFLAYLILVYHSQVSLAIDSISQSLTLRDDGNTTLVSKGGTFELGFFTPGNSQKRYLGIWYKKIPIQTVVWVANRVNPINDSSSTILRLNSSGSLVLSQNDTVVWSTTPLRKPESPIALLLDSGNLVVRDEKETNTEEAYLWQSFDYPTDTFLPEMKFGWDFRIGLNRNLTAWKSPDDPSPGDFSFGMVPHNYPDAYMMKGGKKFYRSGPWNGLHSSGSPQVRTNPIYDFRFVFNKDELYYTYSLKNSSVISRLVLNGTANVRRRYVWIESAQRWEIYTSVPLDLCDTYALCGAYANCIITDSPVCQCMEGFKPKSPQAWYSMDWSHGCVRNKPLSCKDKEKDGFMKLSGLKVPDTTHSWLDEKIGLEECRAKCLDNCSCMAYANADVNGKGSGCAMWFGDLIDIRQFASGGQDLYVRMDASELEHANDGHKKGVIVAVIVFLVVAAVSGILILGWCYKKKSRTNIKEKSEFSINRDHNSGMQVDDMDLPVFDLSTIAKATSNFTINNKIGEGGFGPVYRGILADGVEIAVKRLSTSSGQGLNEFKNEVKLIAKLQHRNLVKLLGCCLEGEEKMLVYEYMPNGSLDSFIFDQQRSELLDWSKRFHIICGIAKGLLYLHQDSRLRIIHRDLKASNVLLDNELNPKISDFGMARIFGGDQKEGNTKRIVGTYGYMAPEYATDGLFSVKSDVFSFGILLMEIISGKRSRGYYNQNHNQNLIGHAWKLWKEGRPLELIDKSLGDSCSLSQILHCIHISLLCVQQYPEDRPGMSCVLLMLVSEFELPEPKQPGFFGKDSSEADSSTSKQQLSSTNEITITLLEAR. 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05735 829 SMART ntp_6 349 428 IPR003609 -
Seca3g05735 829 ProSiteProfiles Protein kinase domain profile. 513 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05735 829 Pfam D-mannose binding lectin 77 183 IPR001480 -
Seca3g05735 829 ProSiteProfiles PAN/Apple domain profile. 346 429 IPR003609 -
Seca3g05735 829 MobiDBLite consensus disorder prediction 795 829 - -
Seca3g05735 829 Gene3D - 22 154 IPR036426 -
Seca3g05735 829 Gene3D Phosphorylase Kinase; domain 1 463 588 - -
Seca3g05735 829 ProSiteProfiles Bulb-type lectin domain profile. 27 150 IPR001480 -
Seca3g05735 829 Pfam Protein tyrosine and serine/threonine kinase 514 727 IPR001245 GO:0004672|GO:0006468
Seca3g05735 829 Gene3D Transferase(Phosphotransferase) domain 1 589 791 - -
Seca3g05735 829 CDD PAN_AP_plant 343 427 - -
Seca3g05735 829 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 221 IPR036426 -
Seca3g05735 829 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 21 775 - -
Seca3g05735 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 345 428 - -
Seca3g05735 829 SMART blect_4 35 157 IPR001480 -
Seca3g05735 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 154 - -
Seca3g05735 829 Pfam Domain of unknown function (DUF3403) 788 829 IPR021820 GO:0004674
Seca3g05735 829 ProSiteProfiles EGF-like domain profile. 291 327 IPR000742 -
Seca3g05735 829 PIRSF SRK 1 829 IPR024171 GO:0004674
Seca3g05735 829 SUPERFAMILY Protein kinase-like (PK-like) 494 784 IPR011009 -
Seca3g05735 829 MobiDBLite consensus disorder prediction 802 829 - -
Seca3g05735 829 Pfam S-locus glycoprotein domain 215 325 IPR000858 GO:0048544
Seca3g05735 829 Gene3D Hepatocyte Growth Factor 345 426 - -
Seca3g05735 829 Pfam PAN-like domain 346 414 IPR003609 -
Seca3g05735 829 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
Seca3g05735 829 SMART serkin_6 513 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05735 829 CDD STKc_IRAK 519 784 - -
Seca3g05735 829 CDD B_lectin 40 157 IPR001480 -
Seca3g05735 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 589 792 - -
Seca3g05735 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 474 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05735 Seca-Chr3 117452926 117457499 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05735 444 798 Receptor kinase-like Gene Family AT4G23230 53.371 8.64e-131 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05735 PK_Tyr_Ser-Thr 6.8e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05735 - - gmx:100778155 1419.83