LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g05726	ATGTTAATTGAGGAAAACTTGAGGAATTTTAATTTTCCTAATTTGGATGTTGCTTATAATTTTTATAATAATTGGTATGGAAAAATGAAGGGATTTTCAGCACGAAAGGGCAAAGAACGTAAAAATGCAATGGAAGAAATTATTGAGAAGACGAATCTATGTCATAGGGAAGGAAAGAGACCAATTAATACGAATGAAAAGATGGGGAAGAAAAAACGTGAAGCAAAGCCTGAGACAAGGTGTTTATGTCCTGCAAAAATAAAGGTTCAGTTAGATGTACATTCTAGCCGTTGGAACGTGACCAAGTTTTTTTATGCCCATAATCATGAAATGCTAGACCCCAAATACACAGGGATGCTACCGGCTCATAGGAAATTGAGTGAAGCTGATATCATGGAGATGAATAACATGCGAAATGCAGGTATTACTACACCTCAAATTTATGGGTCATTTGCCAGCCAATCTGATGGGTACAACAATATTGGTTTTCGGAAAAGAGATCTTTACAATGAGATTGGTAGGCAAAGAATGTTGCAGCTAAGTGATGCTAAGGGTGCAATTAAGTACCTACGTGAAAGGGAGAAGAATGAAGGGTCAATGTTTTGGAGGCACACGACTGACTATGAAGGCCGACTCCAGTGA	642	0.3801	MLIEENLRNFNFPNLDVAYNFYNNWYGKMKGFSARKGKERKNAMEEIIEKTNLCHREGKRPINTNEKMGKKKREAKPETRCLCPAKIKVQLDVHSSRWNVTKFFYAHNHEMLDPKYTGMLPAHRKLSEADIMEMNNMRNAGITTPQIYGSFASQSDGYNNIGFRKRDLYNEIGRQRMLQLSDAKGAIKYLREREKNEGSMFWRHTTDYEGRLQ.	214

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g05726	213	Pfam	FAR1 DNA-binding domain	20	112	IPR004330	-
	Seca3g05726	213	PANTHER	FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED	12	168	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g05726	Seca-Chr3	116945038	116945679	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Seca3g05726		FAR1	2e-16	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g05726	-		-	mtr:112420123	217.238