Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05712 ATGGTTCCTGCATCTAAGGAAGCCATAAAAATGTCACTGAAGAAAGTTAAGGTTACTGAAGAGAATCAGTGTTGTGCTATCTGCATGGAGGAGTTTCAAATCGGTGCTGATGGTAATAACAGGGCAGATGAGGGCTACTCAATGCCCTGTTCTCATGTGTTTCATCCAACCTGTATTCTAAAATGGTTGAACAAGAGTAATACGTGTCCATTGTGTCGCTACCCTTTGCCAACTGTCAATGAAGAGATGAATGATAAGTTGACCTGTTGGACTTTTATTAGTTCTATAATTAGGGCCATTTTTTCTTTTCTCTAA 315 0.3937 MVPASKEAIKMSLKKVKVTEENQCCAICMEEFQIGADGNNRADEGYSMPCSHVFHPTCILKWLNKSNTCPLCRYPLPTVNEEMNDKLTCWTFISSIIRAIFSFL. 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05712 104 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 79 IPR013083 -
Seca3g05712 104 ProSiteProfiles Zinc finger RING-type profile. 25 73 IPR001841 -
Seca3g05712 104 SMART ring_2 25 72 IPR001841 -
Seca3g05712 104 SUPERFAMILY RING/U-box 19 84 - -
Seca3g05712 104 Pfam Ring finger domain 25 73 IPR001841 -
Seca3g05712 104 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05712 Seca-Chr3 116609661 116609975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05712 1 78 C3H Transcription Factor Family AT3G15740 42.308 6.38e-16 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05712 - K22378 ccaj:109804929 94.7449