Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05710 ATGCATCATCATAGGATGGACTCGCAGCAGCTTTTCCCTTTCAGTGTGACTAGTGCAGGATTACCTTACATGTCATCTTTTCCCTCTATTCCATCCCTACCCAACAGGCAGCTTGGATCCTGGAAAGTTGACTCAGGAAACTCACCTAATTCACCCTTTTCCACTCATTTTGATTCTGATACTCTTTCTGCACTGAGTGATAGCCAGGAGCAACAATTCTCTGGAGAAATCCTCTCTGGTATCAGCCCCTCATGTAAATCTTCACTGGAAACCAACCATTATGTGCATAGATCAATCTCATCTGTGGAAAGTCTCAGAGAGAGTTTGCAACTGTATTCTGCTAGGAGCTCTCTTCTACAGAATGCAAGTTGCAACCAGAAAATCAGACACGCATTGCTGGAACTAGAAACTGCTCTGATGGCCCCTGATGATGAAGAAGTTACCATGCCAAATACTCCATTGGCTGAGAGCACCAGGCCAACTACATCTGGCCAGAGATATAGGTCCTGGAGCCAGGAGCATCAGGGTTCACAATATATTCAAAGTCAGCCATCACCTGTTACTAGCAGCAGGCAGTCAAGTGAAGGTGTACATGTAGAGAAAAGACAAAAGTTGATGGAGGAAGCATCCCTACAAGGGTTCCCATCAAGCGATTTGAAGCAATTGCTGATTGCATGTGCCAGAGCCATGTCAGAAAACAACATGAAAGATTTTGATCAATTGATAGGGAAGGCTAGAACTGCTGTGTCTATCAATGGGGAGCCAATCCAGAGGCTTGGTGCATATATGGTAGAAGGGCTTGTAGCAAGGAAAGAAGCATCAGGGAATAGCATCTATCATGCCCTCAAGTGTAGAGAGCCTGAAGGCAAAGACTTACTCTCTTACATGCAATTGCTTTTTGAAATCTGCCCATACTTAAAATTTGGTTACATGGCTGCCAATGGAGCCATTGCTGAAGCATGCAGAAATGAGGACCACATACACATCATAGACTTTCAGATTGCTCAGGGAACTCAATGGATGACCCTCCTTCAAGCTCTTGCAGCAAGACCTGGTGGGGCTCCCCATGTGCGAATCACAGGGATTGATGACCCTGTTTCCAAGTATGCTCGTGGGGATGGACTAGAGGTTGTTGGGAAAAGATTGGCCTTGATGTCTGAGAAATTTGGCATCCCAGTGGAGTTTCATGGAGTGCCTGTTTTTGCTCCTGAAGTGAAAAGAGATATGCTTGATATCAAGCCTGGGGAGGCTTTGGCTGTGAATTTTCCCTTGCAACTTCATCACACAGCTGATGAGAGTGTTGATGTGAGTAACCCAAGGGATGGACTTTTGAGATTGGTGAAGTCTCTTTCACCCAAGGTGGTCACACTGGTGGAGCAGGAATCAAACACAAACACAACTCCATTCTTCAACAGGTTCATAGAAACCTTGGATTACTACTTGGCAATCTTTGAGTCCATTGATGTCACCCTCTCAAGAAATAGCAAGGAGAGGATTAATGTGGAGCAACATTGTCTGGCCCGGGATATTGTGAATGTTATTGCTTGTGAAGGAAAGCAAAGGGTAGAGCGGCATGAACTGTTTGGCAAGTGGAAGTCAAGGTTAACAATGGCTGGCTTCCGTCAATGTCCTTTAAGCTCTTATGTGAATTCTGTGATAAGAAGCCTTCTGAGGTGCTATTCAGAACACTATACACTAGTGGAGAAGGATGGAGCCATGCTATTGGGGTGGAAGAACAGAAACTTGATATCAGCTTCAGCCTGGCACTGA 1770 0.452 MHHHRMDSQQLFPFSVTSAGLPYMSSFPSIPSLPNRQLGSWKVDSGNSPNSPFSTHFDSDTLSALSDSQEQQFSGEILSGISPSCKSSLETNHYVHRSISSVESLRESLQLYSARSSLLQNASCNQKIRHALLELETALMAPDDEEVTMPNTPLAESTRPTTSGQRYRSWSQEHQGSQYIQSQPSPVTSSRQSSEGVHVEKRQKLMEEASLQGFPSSDLKQLLIACARAMSENNMKDFDQLIGKARTAVSINGEPIQRLGAYMVEGLVARKEASGNSIYHALKCREPEGKDLLSYMQLLFEICPYLKFGYMAANGAIAEACRNEDHIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSKYARGDGLEVVGKRLALMSEKFGIPVEFHGVPVFAPEVKRDMLDIKPGEALAVNFPLQLHHTADESVDVSNPRDGLLRLVKSLSPKVVTLVEQESNTNTTPFFNRFIETLDYYLAIFESIDVTLSRNSKERINVEQHCLARDIVNVIACEGKQRVERHELFGKWKSRLTMAGFRQCPLSSYVNSVIRSLLRCYSEHYTLVEKDGAMLLGWKNRNLISASAWH. 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05710 589 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 202 585 IPR005202 -
Seca3g05710 589 MobiDBLite consensus disorder prediction 151 194 - -
Seca3g05710 589 Pfam GRAS domain family 219 588 IPR005202 -
Seca3g05710 589 ProSiteProfiles GRAS family profile. 210 589 IPR005202 -
Seca3g05710 589 MobiDBLite consensus disorder prediction 146 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05710 Seca-Chr3 116574293 116577992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05710 210 588 GRAS Transcription Factor Family AT1G50600 61.478 2.09e-174 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca3g05710 GRAS 5.9e-129 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05710 - - adu:107462432 969.148