Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05706 ATGAAAGGAGGGGAGTCAATAGGACTAATCATTGGGATTTCCATAGGTGTGGTAATTGGAGTTGTTTTGGCAATTTCTGCATTGTTCTGTGTTAGATACCATAGGAAGCGTTCACAGATAGGCAATAGCAGTTCCCGGAGGGCAGCAACCATACCTATCCGTGCAAATGGTGCTGATTCATGTACCATTCTATCAGACTCAACCTTAGGGCCAGATTCACCTGTAAGGTCTGGACGTAATGGCATGTCCTTCTGGCTTGATGGCTTCAAGAAGAGTAACATGGTTTCAGCATCTGGAATACCGGAATATTCATACAAGGACCTGCAAAAGGCAACATATAATTTTACAACACTCATAGGGCAAGGTGCGTTTGGTCCTGTTTATAAAGCTCAGATGTCTACTGGTGAGACTGTTGCAGTTAAAGTTCTTGCAACTAATTCTAAACAAGGGGAGAAAGAATTTCACACAGAGGTTATGTTGCTGGGGAGGTTACACCATAGAAACCTGGTCAATTTGGTTGGATATTGTGCAGAAAAGGGGCAACATATGCTTGTATATGTCTACATGAGTAAAGGCAGCTTGGCTTCCCACTTGTATAGGGAAGAGAATGGGGCATTGAGCTGGGATTTGAGGGTTCACATAGCTTTAGATGTAGCAAGAGGCTTGGAGTATCTTCATGATGGGGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCCAACATTCTCTTGGACCAGTCCATGCGAGCCAGGGTTGCTGATTTTGGACTTTCAAGAGAAGAGATGGTGGATAAACAGGCAGCTATTCGGGGTACCTTTGGCTATCTTGACCCTGAGTATATATCTTCAGGGACATTCACCAAGAAAAGTGATGTATACAGTTTTGGGGTGTTGCTCTTTGAACTTATAGCTGGCCGAAATCCTCAGCAGGGTCTTATGGAATATGTTGAACTTGCAGCAATGAACACTGAGGGAAAAGTTGGTTGGGAAGAGATTGTTGATTCTAGGCTTGAGGGGAAATGTGATTTCCAAGAGCTAAATGAAGTGGCAGCTCTTGCCTATAAATGCATCAACCGTGCACCAAGGAAGCGCCCTTCTATGAGGGACATAGTGCAAGTGTTGACAAGGATCCTTAAAACAAGGCACAATAAGAACCATCATCACAAAAAGTCCCTTTCAGCCACAGCAGATGAAGTTTCCATAGATATTGATCAGCCAGAAACCAATACTAATGTTACTGACCACCGAAGAGAAGAATCTATAGATAGTGCAGCTGACATGTATGATTTGTAG 1296 0.4329 MKGGESIGLIIGISIGVVIGVVLAISALFCVRYHRKRSQIGNSSSRRAATIPIRANGADSCTILSDSTLGPDSPVRSGRNGMSFWLDGFKKSNMVSASGIPEYSYKDLQKATYNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATNSKQGEKEFHTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVYMSKGSLASHLYREENGALSWDLRVHIALDVARGLEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDKQAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSRLEGKCDFQELNEVAALAYKCINRAPRKRPSMRDIVQVLTRILKTRHNKNHHHKKSLSATADEVSIDIDQPETNTNVTDHRREESIDSAADMYDL. 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05706 431 ProSiteProfiles Protein kinase domain profile. 113 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05706 431 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 87 188 - -
Seca3g05706 431 Gene3D Phosphorylase Kinase; domain 1 87 188 - -
Seca3g05706 431 SMART serkin_6 113 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05706 431 PANTHER OS01G0750732 PROTEIN 4 392 - -
Seca3g05706 431 Gene3D Transferase(Phosphotransferase) domain 1 189 404 - -
Seca3g05706 431 CDD STKc_IRAK 119 378 - -
Seca3g05706 431 FunFam calcium/calmodulin-regulated receptor-like kinase 1 189 398 - -
Seca3g05706 431 Pfam Protein tyrosine and serine/threonine kinase 115 375 IPR001245 GO:0004672|GO:0006468
Seca3g05706 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Seca3g05706 431 SUPERFAMILY Protein kinase-like (PK-like) 102 394 IPR011009 -
Seca3g05706 431 MobiDBLite consensus disorder prediction 383 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05706 Seca-Chr3 116346240 116350889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05706 103 375 Glycoside Hydrolase AT3G07070 45.862 4.90e-73 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Seca3g05706 PK_Tyr_Ser-Thr 4.4e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05706 - - gmx:100799586 765.377