Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05703 ATGCCAACTGTGTGGTTCTCTTTGAAGAGGTCTCTACACTGCAAATCAGAGCCATCAGATGTTCATGTTCCAAAATCAAGGAAGCACTTGAGCACAATCTTGACTAAAAGGGCAGGGACAGGGAGGTCAGGGTGTTCCAGGTCCATAGCAAATCTCAAAGATGTAATCCATGGAAGCAAGAGGCATCTAGAGAAGCCACCAAGTTGCAGTCCAAGATCCATAGGGAGCAGTGAGTTCCTCAATCCAATAACCCATGAAGTGATTTTGAGTAACTCAAGGTGTGAGCTGAAAATTACTGGCTATGGAGGATTCCAAGAAGGGGTTGGCAGTGATGGTGGAGGTGGTACTAATTGTGGTGATTCAACCTTTGTGGGCACTTTAAGGCCTGGGACTCCTGGCCCTGGAGGGCACCCTACAATGCATTACTTCAACCCTTCTTTTAGGACTTCATCCACTCCTCCAAGGAAATCTCCTTTCCTTTCATCAGATAAAGAAGGGTCTGGCTTGCATGGTGCTGGACTTCATTCAAGTAATAGGTTGTCTCTTGAGACAAATTCAAATGGATCTTCTACTATAACTTGCCACAAATGTGGAGAGCAATTTAACAAATGGGAAGCTGCTGAAGCTCATCATCTCTCCAAGCATGCTGTTACTGAACTTGTGGAGGGTGATTCATCAAGAAAAATAGTGGAGATAATATGCAGGACAAGCTGGTTGAAGTCTGAAAACCAATGTGGGAGAATTGAGAGAGTTTTGAAAGTCCATAACATGCAAAAGACTCTGGCTAGGTTTGAAGAGTACAGGGAGATGGTGAAAATCAAAGCTAGCAAACTCCCCAAGAAGCATCCTAGGTGCCTTGCTGATGGGAATGAGCTTTTGAGGTTCTATGGCACCACTGTTGCTTGCTCTCTTGGTCTCAATGGTTCTTCCAGCCTGTGCCTATCTGAAAAATGTTGTGTTTGTAGAATCATCAGAAATGGTTTTTCTGCCAAGGAGGAACTCAAGGGTGGAATAGGTGTTTTCACTACTTCCACAAGTGGGAGAGCTTTTGAATCTCTTGAGATTTTTGACCATGACCCATCATTAAGAAAAGCACTAATAGTCTGCAGAGTCATTGCTGGCAGGGTCCATAGACCACTGGAGAACATTCAGGAAATGGCAGGTCAGACAGGGTTTGATTCATTGGCTGGCAAAGTTGGTCTTTATTCAAATATTGAGGAGCTTTACTTGCTCAATCCTAGAGCTCTTCTACCTTGCTTTGTGGTAATTTGCAAACCCTGA 1281 0.4411 MPTVWFSLKRSLHCKSEPSDVHVPKSRKHLSTILTKRAGTGRSGCSRSIANLKDVIHGSKRHLEKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGYGGFQEGVGSDGGGGTNCGDSTFVGTLRPGTPGPGGHPTMHYFNPSFRTSSTPPRKSPFLSSDKEGSGLHGAGLHSSNRLSLETNSNGSSTITCHKCGEQFNKWEAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQCGRIERVLKVHNMQKTLARFEEYREMVKIKASKLPKKHPRCLADGNELLRFYGTTVACSLGLNGSSSLCLSEKCCVCRIIRNGFSAKEELKGGIGVFTTSTSGRAFESLEIFDHDPSLRKALIVCRVIAGRVHRPLENIQEMAGQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKP. 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05703 426 FunFam C2H2-like zinc finger protein 216 425 - -
Seca3g05703 426 SUPERFAMILY ADP-ribosylation 217 425 - -
Seca3g05703 426 Gene3D - 207 425 - -
Seca3g05703 426 MobiDBLite consensus disorder prediction 128 185 - -
Seca3g05703 426 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 424 - -
Seca3g05703 426 ProSitePatterns Zinc finger C2H2 type domain signature. 194 215 IPR013087 -
Seca3g05703 426 MobiDBLite consensus disorder prediction 143 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05703 Seca-Chr3 116305148 116307716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05703 1 426 C2H2 Transcription Factor Family AT5G54630 68.898 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g05703 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05703 - - gmx:100787790 756.903