Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05689 ATGGCTTGCAACAGCATTCAAAGCAGTTCTTCATCGCAGATGATATGTAAATATGATGTGTTTGTAAGCTTCAGAGGTAAAGACACTCGCAACAATTTCACCGATCATCTCTTTGGTGCCCTCAAGAGAAAAGGCATCGTTACCTTCAGGGACGACACAAAACTCAGAAGAGGTAAATTCATAGCAGCTGAGCTCCAACAAGCAATTGAAGGGTCTCGGATTTTGATTGTGGTATTCTCAAAGAACTATGCTTCCTCAACATGGTGCTTGAGAGAACTGGTTAAGATCCTCGATTGTCTTCAAGTCTCAGGAAAACGTGTCCGGCCTATTTTCTACGATGTTGATCCATCTGAGGTGCGAAAACAGAGCGGGGATTATGAGAAAGCGTTTGCTGAACATGAGGAAAGATTCAAAGAGGATTTAGAGAAGATGGTGGAAATGCAGAGATGGAGAGAAGCTCTGACACAAGTGGCCAATCTCTCTGGTTGGGATATTCGGAATAAGCCACACTATGAAGAAATTGAAAAAATTGTTAAAGAGGTATTAGCTACATTGGGTCATACACTTTCAAGCCTTCCAAATGATCTAGTGGGGATGCAAACTCCTGTAGAAGAGTTAGAAAAACTTTTACATTTTGACTTGGTTGATGATCTTCGTGTCGTAGGAATTTTTGGGATGGGTGGAATTGGGAAGATAACTCTTGCTACTGTTTTATATGACAGAATCTCTCGAAACTTTGATGCTTGCTGTTTTATTGATGATGTAAGCAAAATATATAGAGATTATGGTCCAATTGAAGCACAAAAGCAACTTCTTTGTCAAACCCTAAAGGAGGAAAACCTTCATCTATGCAATCTGTATACTGCAACTAATTTGATACGGAGCAGGCTACGCCATCTAAGGTCCCTTATAGTTCTTGATAATGTTGATCAAGTTGAACAACTAGAGAAATTAGCTCTGAACCGTGAATGCTTAGGTGCAGGGAGTAGAATCATCATAATTTCTAGAGATGAGCATATCCTAAAAGAGTATGGAGTGGATGTAGTTTACAAAGTTAAACTCTTAAATGGTGCTAATTCTCTTCAACTATTTTTGTAG 1098 0.3934 MACNSIQSSSSSQMICKYDVFVSFRGKDTRNNFTDHLFGALKRKGIVTFRDDTKLRRGKFIAAELQQAIEGSRILIVVFSKNYASSTWCLRELVKILDCLQVSGKRVRPIFYDVDPSEVRKQSGDYEKAFAEHEERFKEDLEKMVEMQRWREALTQVANLSGWDIRNKPHYEEIEKIVKEVLATLGHTLSSLPNDLVGMQTPVEELEKLLHFDLVDDLRVVGIFGMGGIGKITLATVLYDRISRNFDACCFIDDVSKIYRDYGPIEAQKQLLCQTLKEENLHLCNLYTATNLIRSRLRHLRSLIVLDNVDQVEQLEKLALNRECLGAGSRIIIISRDEHILKEYGVDVVYKVKLLNGANSLQLFL. 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05689 365 SMART till_3 17 160 IPR000157 GO:0007165
Seca3g05689 365 Gene3D - 171 350 IPR027417 -
Seca3g05689 365 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 163 IPR035897 -
Seca3g05689 365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 365 IPR027417 -
Seca3g05689 365 ProSiteProfiles TIR domain profile. 16 185 IPR000157 GO:0007165
Seca3g05689 365 Pfam NB-ARC domain 203 364 IPR002182 GO:0043531
Seca3g05689 365 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 364 IPR044974 GO:0006952
Seca3g05689 365 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 187 - -
Seca3g05689 365 PRINTS Disease resistance protein signature 220 235 - -
Seca3g05689 365 PRINTS Disease resistance protein signature 296 310 - -
Seca3g05689 365 Gene3D - 2 158 IPR035897 -
Seca3g05689 365 Pfam TIR domain 17 191 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05689 Seca-Chr3 115969592 115970939 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05689 18 364 WRKY Transcription Factor Family AT4G12020 28.940 3.33e-34 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05689 - - gmx:100820213 523.857