Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05621 ATGGATTTGAGCAACTCCAAATATCTCATGGAAACGCCAAAGTTTTTTTGGACCCCAAAACTTGAGCGACTAGATTTTTCAGGATGCACAGACTTATCACAGGTCCATCCATCAATTGGACATCTTACAAAACTTGTTTTCTTGAGTTTACAAAACTGTAGCAATCTGGTCAACATAGATTTCGGCAATGTATCAAATTTAAGTTCTTTGCAAGTTTTACGTATCTCTGGTTGCACAAAACTTGAAAAGACACCAGATTTTACAGGAATTTCAAATCTTGAGTACCTTGATATGGATCGATGTACAAGTTTATCTACGATTCATGAATCAATTGGAACTATTGCAAAGCTTAGCTTCTTGAGTTTGAGAGACTGCACAAATCTTGCTAGTATACCTGACAACATTAATACCATGACATCTCTTATAACTCTAGATTTATGTGGCTGCTCAAAATTTACAAAGTTGCCCTTGAGAGGGACTTTCTTGAATAATTCTCGTCTGAAATTATCTTTGATATTTTTGGACATAAGCTTTTGCAATCTTTTCTATGTACCAGATGCAATTGGAGGGTTAAGGTGCTTGGAAAGACTAAATTTACAGGGAAACAACTTCACTTCACTACCTTCTACCATCAAATGGCTTCATAGTCTAGCATACTTAAACTTGGCTCATTGCCATCAGCTTAAATGTTTACCTGAGCTCCCACTAAAGAGTGCTTCATCAGTGGGAAGGTATTTTAAAACAACATCCGGATCTCGTGATCACAGGTCAGGATTATATATTTTCGACTGCCCCAAGATTAATAATAAGTTTTCCACATACCAATACTCTACATATAATCATGATGTGTTTCCATGGCTACAAAGACTACTTATGGAACCCCGTCACTTCCGGTGTGGCTTTGACATTGTTATTCCTTGGGATTGGAAAGATATTTGTTCCGAAGAAAATATTATTATTCCACTGTGGTTTTCTCATAAATTTAATGGGGGTTCCATAATAAGGATAGTAACCTCTAATATGGATGAGAACTGGATTGGCTTTGCCTTTTGTGTGGCATTTGAGATAAACAATCATCCTACAATTCATGGTACATCACATCATTCATTTTCCTCGTCACTGCCACATCATTTTTATCTTTCCTTTGAAAGTGAACACACAGAAGAACGCTTCGATATGCCGCTTCATTTGGAACTTAACAAGATTGATAGTTCAAAACATCTTTGGGTAATATATATCTCTCGACAACACTGTCATTTTGTGAAAACAGGAGCGCATATCACATTTAAAGCCTACCCAGGTTTGACTGTAAAGAATTGGGGATTGCGCATGCTAATCAAGGACACAAACGTAAATGGACGAGGTTGGAGTTTGAATTACCGTATCATCTGTAGTCTCTTACCAAAATTTGATGCAAGATGTCTCGTCTTTGATTATGCGGAAGAAAGCAGTACTAACTATGGGCCTAAAATCCAGCTTCCTTACAATTGGTTGGTTACTGAGGAAGATGAAGTTGAGAATTTGGAAGCCAAGTCAAAAGAAAATGGTCTTTCTAATTTGGGCCTTTAG 1569 0.3716 MDLSNSKYLMETPKFFWTPKLERLDFSGCTDLSQVHPSIGHLTKLVFLSLQNCSNLVNIDFGNVSNLSSLQVLRISGCTKLEKTPDFTGISNLEYLDMDRCTSLSTIHESIGTIAKLSFLSLRDCTNLASIPDNINTMTSLITLDLCGCSKFTKLPLRGTFLNNSRLKLSLIFLDISFCNLFYVPDAIGGLRCLERLNLQGNNFTSLPSTIKWLHSLAYLNLAHCHQLKCLPELPLKSASSVGRYFKTTSGSRDHRSGLYIFDCPKINNKFSTYQYSTYNHDVFPWLQRLLMEPRHFRCGFDIVIPWDWKDICSEENIIIPLWFSHKFNGGSIIRIVTSNMDENWIGFAFCVAFEINNHPTIHGTSHHSFSSSLPHHFYLSFESEHTEERFDMPLHLELNKIDSSKHLWVIYISRQHCHFVKTGAHITFKAYPGLTVKNWGLRMLIKDTNVNGRGWSLNYRIICSLLPKFDARCLVFDYAEESSTNYGPKIQLPYNWLVTEEDEVENLEAKSKENGLSNLGL. 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05621 522 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 65 156 - -
Seca3g05621 522 ProSiteProfiles Leucine-rich repeat profile. 193 214 IPR001611 GO:0005515
Seca3g05621 522 Pfam C-JID domain 320 448 IPR045344 -
Seca3g05621 522 SUPERFAMILY L domain-like 2 236 - -
Seca3g05621 522 Gene3D Ribonuclease Inhibitor 165 244 IPR032675 -
Seca3g05621 522 Gene3D Ribonuclease Inhibitor 1 87 IPR032675 -
Seca3g05621 522 Gene3D Ribonuclease Inhibitor 88 164 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05621 Seca-Chr3 113699472 113702545 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05621 65 233 WRKY Transcription Factor Family AT4G12020 31.765 8.55e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05621 - - vra:106778604 567.77