Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05620 ATGGATTATTCTAACAGCCCCTCATCTTTGCGGATCTGTAGATACGATGTGTTTCTCAGTTTCCGAGGCACTGAGACACGTAACACTTTTGTTGATCATCTTTACCATCATCTCATCAGAAAAGATTATGCTTCCTCGTCATGGTGTTTGGATGAAATGGCTACTATTGCTGAATTTCATTGCCATAAACAATTGAAACAAACTAATTTCCCAGTTTTCTATGATGTTGATCCATCTAATGTAAGAAATCAGAATGGAGTGCCAGAGTTTACAGAGATTGAAAAAATTGTCCAAGCAGTGATAAAAACATTGGGTCATAAATTCTCAAAGTTCACTAATGACTTAATTGGGATACAACCTTGCGTAGAAGAATTAGAAAAGCTTCTAAAATTGAACTCAAAGGATGATGATTTTCGAGTTTTAGGAATTTGGGGGATGGGTGGAATAGGAAAGACAACTCATGCTACTGTCTTATATGATAGAATCTCTTATCAATTTGATGCTTGTTGTTTCATTGAGAATGTGAGTAAAATTTATAGAGATGGTGGTGCTATTGCAGTACAGAAACAAATTCTGCGTCAAACTCTAGATGAAAAAAATCTAGACACATATGATACTTGTAAAATATCTGGCATTATGGTGAATAGGCTACACAGTAGCATTAAGGTCCTTTTAGTTCTTGACAATGTTGATCAATTAGAGCAATTGCAAGAATTGGCTATAAATCCTGAATTCCTTTGCAAAGGAAGTAGAATAATCATAACCACAAGGGATGAGCATATTCTAAGAGCGTATGGAGCAAATGAAGTTCATGAGGTTCCACTATTGAGTAGTAATGATGCTTGTGAACTTTTTTGTAGAAAAGCCTTCAAAAGTGAAGACCAAAGTAGCAATTGTGTTGAGCTGATTCCAGAGGTACTTAAATATGCTCAATGTCTTCCATTAGCAATCAAAGTAATGGGCTCTTTCTTGTGTACCCGAGATGCAACTCAGTGGAAAGATGCCTTAGATAGATTCGGGAACAATCCAGACAATAAAGTTATGGATGTGCTTCAGATAAGTGTTGATGGACTAACACATGAGGAGAAAGAAATATTTTTGCACATTGCTTGTTTCTTTAAAGGGGAGAGGGAGGATTATGTAAAGCGTATTCTAGATGCTTGTGGTTTGCACCCTCACATTGGAATTGAAAGAATGCTTGAGAAATCAGGAAATTCATATGCATGA 1227 0.3627 MDYSNSPSSLRICRYDVFLSFRGTETRNTFVDHLYHHLIRKDYASSSWCLDEMATIAEFHCHKQLKQTNFPVFYDVDPSNVRNQNGVPEFTEIEKIVQAVIKTLGHKFSKFTNDLIGIQPCVEELEKLLKLNSKDDDFRVLGIWGMGGIGKTTHATVLYDRISYQFDACCFIENVSKIYRDGGAIAVQKQILRQTLDEKNLDTYDTCKISGIMVNRLHSSIKVLLVLDNVDQLEQLQELAINPEFLCKGSRIIITTRDEHILRAYGANEVHEVPLLSSNDACELFCRKAFKSEDQSSNCVELIPEVLKYAQCLPLAIKVMGSFLCTRDATQWKDALDRFGNNPDNKVMDVLQISVDGLTHEEKEIFLHIACFFKGEREDYVKRILDACGLHPHIGIERMLEKSGNSYA. 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05620 408 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 88 IPR035897 -
Seca3g05620 408 Gene3D - 98 270 IPR027417 -
Seca3g05620 408 Gene3D - 8 39 IPR035897 -
Seca3g05620 408 PRINTS Disease resistance protein signature 310 324 - -
Seca3g05620 408 PRINTS Disease resistance protein signature 217 231 - -
Seca3g05620 408 PRINTS Disease resistance protein signature 140 155 - -
Seca3g05620 408 SMART till_3 14 118 IPR000157 GO:0007165
Seca3g05620 408 Gene3D - 275 359 IPR042197 -
Seca3g05620 408 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 403 IPR044974 GO:0006952
Seca3g05620 408 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 369 IPR027417 -
Seca3g05620 408 Gene3D - 40 97 IPR035897 -
Seca3g05620 408 Pfam NB-ARC domain 126 354 IPR002182 GO:0043531
Seca3g05620 408 Pfam TIR domain 41 87 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05620 Seca-Chr3 113689088 113691081 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05620 116 403 WRKY Transcription Factor Family AT5G45050 34.256 1.77e-43 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05620 - - gmx:100807905 547.74