Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05618 ATGGAGTCAAGGTTAAGGTCAAAATATTCAGGTATTTTGCTTTCTTGGAGATCCTTCCTCCTGCGACCGTATTGGGCCCTGCTGGGTCGTCGGCCTTCTTACCACCTGAGCCCATTGGGCCAGGGAGGTACACCTTTCAGTTATTTTATGGATTTAAGTAGCATCCAAAGCTATAAATATGATGTGTTTATCAGTTTCAGAGGCAGTGACACACGCAACACTTTCGTTGATCATCTTTATGCTCACCTCATTAGAAAAGGTATTTTCGTGTTCAAGGATGACCAAAGTCTTAAGAAAGGAGAGTCCATTTCACCGCAACTTCTACATGCAATTAAACATTCCCGGGTTTCTATCATTGTCTTCTCAAAACATTATGCTGAGTCATCATGGTGTTTGGATGAAATGGCTGCAATTGCTGAATGCCTCGAAGAATTCAAACAAACTGTTTTCCCTGTTTTCTATGATGTGGATCCATCCCCTGTGCGAAGACAGAATGGGGTGTATGAGGATGCCTTTGTTTTACATACTGAGAAATTCAAACATGACCCTGCCAAGGTTGATAGGTGGAAGAGAGCTATGACAGATTTGGCTGGATCAGTTGGTTGGGATGTCAGAAATAAGCCTGAGTTTCGAGAGATTGAAAATATTGTTCAGGCAGTAATAAAAACATTGGGTCATAAGTTTTCAGGGGTTGCTGATGACCTTATTGGGATACAACCTTGTGTAGAATCTTTAGAAAGTCTTTTGAAATTAAGCTCATTGAATAATGACTTTCCAGTTTTAGGAATTTGGGGGATGGGTGGAATAGGAAAGACAACTCTTGCCACTGTATTGTATGATAGAATCTCTTATCAGTTTGATGCTTGTTGTTTCATTGAGAATGTAAGCAAAGTTTATAGAGATGGTGGTGCTATTGCTGTACAAAAACAAATTCTTCGTCAGACTTTAGATGAAATAAATCTAGAGACATACAGTCCTTCTGAAATATCTGGAATTGTAAGGAATAGGCTACACAACATAAAGGTCCTTGTAGTTCTTGACAATGTTGATCAATTCGAGCAACTTCAAGAGTTGGCTATAAATCCTAAGTTGCTTCACATAGGAAGTATAATGATCATTACAACTAGGGATGAGCATATCCTAAAAGCTTATGGAGTGCATGTTGTGCACGAGGTTCCACTATTGAGTAGTAATGATGCTCGTGAACTTTTTTATAGAAAAGCCTTCAAAAGTGATGATCCCACTAGTGGATGTGCAAAGTTGACTCCTGAGATACTAAAGTATGTGCAAGGTCTTCCATTAGCGGTTAGAGTAGTAGGTTCTTTCTTGTGTGCTCGAAATGCAACCCAGTGGAGAGATGCCTTGTATAGACTGAGGAATAATCCAGACAACAAAATTATGGATGTGCTTCAGATAAGTTTTGAAGGATTACATTTAGAGGACAAAGAAATATTTCTACATATTGCTTGTTTCTTTAAAGGAGAGAAGGAAGATTATGTAAAGCGAATTCTAGATGCTTGTGGGTTACACCCGCATATTGGAATTCAAAATATGATCGAGAGATCACTCATAACTATTAGAAACCAGGAAATTCATATGCATGATATGTTGCAAGAGTTGGGGAAGAAAATTGTTCGACAACAATTTCCTGAAGAACCAGGATCATGGAGTAGATTGTGGCTTTATCAGGATTTCCATCATGTCATGATGACAAAAACGGGATCGAACAAGGTTAAAGCCATAATTCTGGATGAAGAAGAGGATATTTCTGAATGCCCTCAGTTGAGGACTGAAGGGTTGTCAATAATGACAGGCCTTATAATTCTTATATTATATTGTAAGAATTTTTTTGGAAGCCTCAATTTTCTTTCTAACAACTTGCAGTATCTTCTATGGCATGGCTACCCTTTTGCTTCTTTGCCATTAGATTTTGAGCCGTATCGGCTTGTTGAATTGAATATGCCTTATAGCAACATCCGACAACTATGGGAAGGTCGCAAGGATCTCCCCCATTTGAAAAGGGTGGATCTGAGCAACTCCAAATATCTTAAGGAGACACCAAATTTTGCTGGGAGCCGAGGACTTGAGCGGCTAGATCTGACAGGCTGCATAAGCCTCTCCCAGGTCCATCCATCAATTGGACTTCTTGAAAAACTTGCTTTCTTGAGTTTGGAAGGCTGTAGTAGTCTGGTCAGCCTTGATCTTGACACGACATCTAATTTATATTCCCTGAAAGTTCTACACCTCTCTGGCTGCACTGAACTAACAAGCACACCAGATTTTACAGGGGTCTCAAATCTTGAGTACCTTGATATTGATCAATGTGTGAGTTTATTAATGGTTGATCAATCTATTGGACATCTTACAAAGCTTAAATTCTTGAGTTTGAGAGACTGCACAAATCTTGTCAGTATACCCACAAGTGTTAATACTATGCCATCTCTTATTACTCTAGATTTATGTGGCTGCTTAAAACTCAAGAATTTGCCCTTGCTGGGACAGATACCAGTGTCTGCAGAAAATATTTACCTTTCTGATGATGAACTCACGTCTTCTTACTATCTGGGTTCTTTGATTTTTTTAGACGTAGGCTTTTGCAATCTAAGTAAAATCCCTGATGCTATTGGAGAGTTAAGGGATTTAGAAAGGTTAAATCTAGAAGGAAATGACATTATTTCACTACCATCTTCTGTGGGGTGGCTTTCCAGTCTAGCTTATTTAAACTTAGCTAATTGCAGCAGGCTTCAATCTTTGCCTGAACTCAAATTGTGTACTTCCCCTTCAGTAGGGGGAAGGTATTTTAAAACAGTATCTGGATCTCATAATCATAGGTCAGGATTATATATTTTCAACTGTCCCTTCTTGGAGATCCCAGTAGAAGGTCAAGACTTGGCACTTTCGTGGCTAAAAAGACTGGTAGAGAATCCTTGTCACTTCCGGTGTGGCTTTGACATTATTGTTCCTGGGAACATAATTCCACAATGGTTTGATCATCAATTTATGGGAGGTTCAAGAGTAAGGATAGATTATATGTATGAGTCTGACAATTGGCTTGGCTTTGCCTTTTGTGTGGCATTTGAGGAATACTATCATCCAACGAAGTCTGGGTCTTCACATTATTCATCTTCTTCACTGGTGCCATATCCTTTTTATCTTTCTTTTGAAAGTGGACACACGGAGGAAACCTTCGATTTTCCACTTCGGTTGGACCTGAATAAGGTTGATGGCTCAAATTCAGAACATCTCTGGCTAATCTACATCTCTCGACCACACTGCCATTTTGTGACAACAGGAGCACATATCACATTTAAATCTCACCCAGGTCTGGAGATGAAAAAATGGGGGTTGCGCATGGTACTCAAGCAAGATATCTTCGAACCACTGACAGATGACGAGGTTAATCAATTAGACTTAGACTATCTTACCTTGGATTATAGCAGCAGCTCCAGGCCTATATTCCAGCTTCCTTATAATTGGTTGCTTACTGAGGACTTGCATGAAAGCAGCAGCAGCAGCAGCTCTGGGTCCAAATTCCAGCTTCCCTATAATTGGTATGTTACTGATGAAGAGAATAACGAGAATATGGAAGTGAATGCCAAAGGAAATTATCTCTCTACTATGGGCCTCTCCACAGGCCAGCCACTGTGA 3648 0.3978 MESRLRSKYSGILLSWRSFLLRPYWALLGRRPSYHLSPLGQGGTPFSYFMDLSSIQSYKYDVFISFRGSDTRNTFVDHLYAHLIRKGIFVFKDDQSLKKGESISPQLLHAIKHSRVSIIVFSKHYAESSWCLDEMAAIAECLEEFKQTVFPVFYDVDPSPVRRQNGVYEDAFVLHTEKFKHDPAKVDRWKRAMTDLAGSVGWDVRNKPEFREIENIVQAVIKTLGHKFSGVADDLIGIQPCVESLESLLKLSSLNNDFPVLGIWGMGGIGKTTLATVLYDRISYQFDACCFIENVSKVYRDGGAIAVQKQILRQTLDEINLETYSPSEISGIVRNRLHNIKVLVVLDNVDQFEQLQELAINPKLLHIGSIMIITTRDEHILKAYGVHVVHEVPLLSSNDARELFYRKAFKSDDPTSGCAKLTPEILKYVQGLPLAVRVVGSFLCARNATQWRDALYRLRNNPDNKIMDVLQISFEGLHLEDKEIFLHIACFFKGEKEDYVKRILDACGLHPHIGIQNMIERSLITIRNQEIHMHDMLQELGKKIVRQQFPEEPGSWSRLWLYQDFHHVMMTKTGSNKVKAIILDEEEDISECPQLRTEGLSIMTGLIILILYCKNFFGSLNFLSNNLQYLLWHGYPFASLPLDFEPYRLVELNMPYSNIRQLWEGRKDLPHLKRVDLSNSKYLKETPNFAGSRGLERLDLTGCISLSQVHPSIGLLEKLAFLSLEGCSSLVSLDLDTTSNLYSLKVLHLSGCTELTSTPDFTGVSNLEYLDIDQCVSLLMVDQSIGHLTKLKFLSLRDCTNLVSIPTSVNTMPSLITLDLCGCLKLKNLPLLGQIPVSAENIYLSDDELTSSYYLGSLIFLDVGFCNLSKIPDAIGELRDLERLNLEGNDIISLPSSVGWLSSLAYLNLANCSRLQSLPELKLCTSPSVGGRYFKTVSGSHNHRSGLYIFNCPFLEIPVEGQDLALSWLKRLVENPCHFRCGFDIIVPGNIIPQWFDHQFMGGSRVRIDYMYESDNWLGFAFCVAFEEYYHPTKSGSSHYSSSSLVPYPFYLSFESGHTEETFDFPLRLDLNKVDGSNSEHLWLIYISRPHCHFVTTGAHITFKSHPGLEMKKWGLRMVLKQDIFEPLTDDEVNQLDLDYLTLDYSSSSRPIFQLPYNWLLTEDLHESSSSSSSGSKFQLPYNWYVTDEENNENMEVNAKGNYLSTMGLSTGQPL. 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05618 1215 Gene3D Ribonuclease Inhibitor 545 734 IPR032675 -
Seca3g05618 1215 Pfam TIR domain 59 227 IPR000157 GO:0007165
Seca3g05618 1215 Gene3D - 394 478 IPR042197 -
Seca3g05618 1215 FunFam Disease resistance protein (TIR-NBS-LRR class) 56 226 - -
Seca3g05618 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 488 IPR027417 -
Seca3g05618 1215 Pfam NB-ARC domain 251 462 IPR002182 GO:0043531
Seca3g05618 1215 SUPERFAMILY Toll/Interleukin receptor TIR domain 53 202 IPR035897 -
Seca3g05618 1215 Gene3D - 54 229 IPR035897 -
Seca3g05618 1215 SMART till_3 59 199 IPR000157 GO:0007165
Seca3g05618 1215 Gene3D Ribonuclease Inhibitor 836 979 IPR032675 -
Seca3g05618 1215 Gene3D Ribonuclease Inhibitor 739 835 IPR032675 -
Seca3g05618 1215 PRINTS Disease resistance protein signature 260 275 - -
Seca3g05618 1215 PRINTS Disease resistance protein signature 336 350 - -
Seca3g05618 1215 PRINTS Disease resistance protein signature 739 755 - -
Seca3g05618 1215 PRINTS Disease resistance protein signature 429 443 - -
Seca3g05618 1215 Gene3D - 234 389 IPR027417 -
Seca3g05618 1215 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 60 733 IPR044974 GO:0006952
Seca3g05618 1215 ProSiteProfiles TIR domain profile. 58 224 IPR000157 GO:0007165
Seca3g05618 1215 Pfam Leucine Rich Repeat 649 665 IPR011713 -
Seca3g05618 1215 Pfam C-JID domain 987 1124 IPR045344 -
Seca3g05618 1215 ProSiteProfiles Leucine-rich repeat profile. 880 901 IPR001611 GO:0005515
Seca3g05618 1215 SUPERFAMILY L domain-like 533 974 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05618 Seca-Chr3 113664128 113671956 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05618 737 914 WRKY Transcription Factor Family AT4G12020 34.314 1.00e-15 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05618 - - psat:127091204 1618.21