Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05617 ATGACACCACCTCACCTACTCCCACTTGACAGAGGTCCCACCCAAACCCTAGGGGAGGAACTCTACCTAACTGCTCACACGATGAAGTTCCGTGGCAACGACACTCGCAATTCTTTCACTGATCATCTTTACAATCATCTCATCAGAAGAGGTATTTTCGCCTTCAGGGATGACCATACTCTTGAGAAAGGAGAATCCATTTCACCACAACTTCTACAAGCAATTAAAGAATCACGGGTTTCCATAGTTGTCTTCTCGAATAATTATGCTGCCTCAACGTGGTGTTTGGATGAAATGGCTACTATTGCTGAATGTCATCAACAATTGAAACAAACTGTGTTCCCAATTTTCTATAATGTTGATCCATCTCATGTGAGAAATCAGAATGGGGTATACCAGGATGCTTTTGTGAGACACACTCAGAAATTCAATCATGATCTAGGCAAGATTGGTAGATGGAAAAAAGCTATGACGGACATAGGCAATTTGGTTGGATGGGATGTAAGAAAAAAGCCAGAATTTACAGAGATTGAAAAAATTGTCCAAGCAGTGACAAAAACATTGGGTCATAAATTCTCAAGGTTTACTAATAATCTCATTGGAATACAATCTCGTGTAGAAGAATTAGAAAAGCTTCTAAAATTGAGCTCAGAGACAGAGGATGATGATTTTCGAGTTTTAGGAATCTGGGGAATGGGTGGAATTGGAAAGACTACTCAGGCTAGTGTATTGTATGATAGAATCTCCTACCGATTTGATGCTCGCTGTTTCATTGAGAATGTAAGCAAAATTTACAAAGATGGTGGTGTTATTGCTGTACAGAAACAAATTCTTCGTCAAACTCTAGATGAAAAGAATCTAGACACATATGATGCATGTGAAATATCTGAGATTATAATAAATCGACTACACAGCAACATTAAGGTCCTTCTAGTTCTTGACAATGTTGATCAATTAGAGCAATTTCAGGAATTGGTTATAAATCCTAATTTTCTTGGCAAAGGAAGTAGAATAATCATAACCACAAGGGATGAGCATATTCTAAGAGTATGTGGAGCAAATAAAGTTCACGAGGTTCCGCTACTGAGTAATACTGATGCTTGTGAACTTTTTGTTAGAACTGCCTTCAAAAGTGGAGAACAGAATAGTAGTTGTGTTGAGTTGATTCCAGAGGTACTAAAATATGCTCAATGTCTTCCATTAGCAATTAGAGTAGTTGGTTCTTTCTTGTGTACCCGAGATGTTACTCAATGGAGAGATGCCTTGGATAGATTGGGGAACAATCCAGACAATAAAGTCATGGATGTGCTTCAAATAAGTATTGATGGACTAACACATGAAGAGAAAGAAATATTTTTACACATTGCTTGTTTCTTTAAAGGGGAGAGAGAGGATTATGTCAATGATAGTAGGGTTGAAGGGTTGTCGAATATGAAAAACCTTAGACTGCTCATATTATATCATAAGCATTTTTTGGGAAGCCTTAATTTTCTTCCTAACCAGCTGCAATATCTTTTATGGCATGGATACCCTTTTGCTTCTCTGCCATCAAATTTTGAGCCGTATTATTTGGTGGAATTGAATTTGCCTAACAGTAGCATTCAACGACTCTGGGAAGGCAACAAGGATCTCCCATTTTTGAAAAGGATGGAGCTAAGCAACTCCAACCATCTTGTTGAAACTCCACAATTTCCTTGGGCTTCAAAACTTGAGCGTCTAGATCTTACTGGATGCACAAATCTATTGCAAGTTCATCCATCAATTGGACTTCTTACAGAACTTGCTTTCTTGAGTTTGCAAAACTGTAGCAGTTTGATCAGCCTTGATTTTGACAATCTATCAAATTTAAGTTGTTTGAAAGTTTTATGCCTCTCTGGTTGCACGAAACTAAAAAATATGCCAAATTTTAGAAGGGCAATAAACCTTGAGTATCTTGATATGGATCGATATGAAAGTTTATACACAGTTAATGAATCTATTGGGGCTCTTACAAAGCTTAGATTCTTGAGTATGAGGGAATGCTGTAATATTGTCACTATACCCAATAGTGTCAATAACATGACATCTCTTATAACTCTAGATTTATGCAAATGTTCAAATTTCATGAATCTCCCTTTGACAGAGACTTTCAGCTCTTCTTTATATTTGAAATCTTTGATTTCTCTGGATGTAAGCTTCTGCAATCTACATGAAATACCTGATGCTCTTGGAGACTTGTGGATTTTGGAAAGAGTGAATCTACAGGGAAACAACTTTGTGACACTACCTTCTACCATCAAGAAACTCTACAGCCTATCATATTTAAACATGGCTCATTGCCATGTTCAATCTTTGCCTAGGCTCCCATCAATAAGTGCTTCATCAGTGGGTAGATATTTTAAAACAGCATCTGGATCTCGTGATCACAGGTCAGGATTATATATTTTCGATTGCCCCAAGGTGGCCGATTTGTTGTTCGTAGACAAATCGTTTACATATTGCAACCGCTATGCATTTAAATGGCTTAAAAGAATAGTTAAGGAACCCCGCCACTTCAGATGTGGTTTTGACATTGTTCTTCCTTGGGATTTGGAAATGAGTGATTCCCTAAGAAATCTTATTATTCCAGAATGGTTCGATCATAAATTTCATGGGGTTCAGTGCGAACACACAGAAGAACGCTTTGATATGCCATTTAATTTGGAACTGAATAAGATTGATGGCTCAAAACATCTTTGGATAATCTATATCACTCGACAACATTGTCATTTTGTGAAAATAGGAGCACATATCACATTTAAAGCCTACCCAGGTTTGGTAATAAAGAACTGGGGATTGCGCATGCTCCAGGAAGATATAAATTATCTTCCATTGTCATGGAAAAGCAATATTGTCATTGGTTATGTAAATGAAAGCAGCAGTAACTTTGAGCCTAAAACCCAACTTCCTTACAATTGGTTAGTTTCTGAGGAAGATGAAGTTGAGAATGATGAAGCCCAAGGGAAAGAAAATAATCTCTCTAATCTGGGCCTTTTGATAGGCTGA 3024 0.3743 MTPPHLLPLDRGPTQTLGEELYLTAHTMKFRGNDTRNSFTDHLYNHLIRRGIFAFRDDHTLEKGESISPQLLQAIKESRVSIVVFSNNYAASTWCLDEMATIAECHQQLKQTVFPIFYNVDPSHVRNQNGVYQDAFVRHTQKFNHDLGKIGRWKKAMTDIGNLVGWDVRKKPEFTEIEKIVQAVTKTLGHKFSRFTNNLIGIQSRVEELEKLLKLSSETEDDDFRVLGIWGMGGIGKTTQASVLYDRISYRFDARCFIENVSKIYKDGGVIAVQKQILRQTLDEKNLDTYDACEISEIIINRLHSNIKVLLVLDNVDQLEQFQELVINPNFLGKGSRIIITTRDEHILRVCGANKVHEVPLLSNTDACELFVRTAFKSGEQNSSCVELIPEVLKYAQCLPLAIRVVGSFLCTRDVTQWRDALDRLGNNPDNKVMDVLQISIDGLTHEEKEIFLHIACFFKGEREDYVNDSRVEGLSNMKNLRLLILYHKHFLGSLNFLPNQLQYLLWHGYPFASLPSNFEPYYLVELNLPNSSIQRLWEGNKDLPFLKRMELSNSNHLVETPQFPWASKLERLDLTGCTNLLQVHPSIGLLTELAFLSLQNCSSLISLDFDNLSNLSCLKVLCLSGCTKLKNMPNFRRAINLEYLDMDRYESLYTVNESIGALTKLRFLSMRECCNIVTIPNSVNNMTSLITLDLCKCSNFMNLPLTETFSSSLYLKSLISLDVSFCNLHEIPDALGDLWILERVNLQGNNFVTLPSTIKKLYSLSYLNMAHCHVQSLPRLPSISASSVGRYFKTASGSRDHRSGLYIFDCPKVADLLFVDKSFTYCNRYAFKWLKRIVKEPRHFRCGFDIVLPWDLEMSDSLRNLIIPEWFDHKFHGVQCEHTEERFDMPFNLELNKIDGSKHLWIIYITRQHCHFVKIGAHITFKAYPGLVIKNWGLRMLQEDINYLPLSWKSNIVIGYVNESSSNFEPKTQLPYNWLVSEEDEVENDEAQGKENNLSNLGLLIG. 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05617 1007 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 475 634 IPR044974 GO:0006952
Seca3g05617 1007 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 455 IPR027417 -
Seca3g05617 1007 SUPERFAMILY Toll/Interleukin receptor TIR domain 30 166 IPR035897 -
Seca3g05617 1007 PRINTS Disease resistance protein signature 226 241 - -
Seca3g05617 1007 PRINTS Disease resistance protein signature 303 317 - -
Seca3g05617 1007 PRINTS Disease resistance protein signature 396 410 - -
Seca3g05617 1007 PRINTS Disease resistance protein signature 685 701 - -
Seca3g05617 1007 Pfam Leucine Rich Repeat 523 542 IPR011713 -
Seca3g05617 1007 SMART till_3 30 163 IPR000157 GO:0007165
Seca3g05617 1007 ProSiteProfiles TIR domain profile. 22 188 IPR000157 GO:0007165
Seca3g05617 1007 SUPERFAMILY L domain-like 473 780 - -
Seca3g05617 1007 Gene3D Ribonuclease Inhibitor 639 818 IPR032675 -
Seca3g05617 1007 Gene3D Ribonuclease Inhibitor 469 638 IPR032675 -
Seca3g05617 1007 Gene3D - 361 445 IPR042197 -
Seca3g05617 1007 Pfam TIR domain 29 193 IPR000157 GO:0007165
Seca3g05617 1007 Gene3D - 193 357 IPR027417 -
Seca3g05617 1007 Pfam NB-ARC domain 209 430 IPR002182 GO:0043531
Seca3g05617 1007 Gene3D - 28 192 IPR035897 -
Seca3g05617 1007 FunFam Disease resistance protein (TIR-NBS-LRR class) 27 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05617 Seca-Chr3 113647752 113655192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05617 31 785 WRKY Transcription Factor Family AT4G12020 25.732 1.43e-41 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05617 - - adu:107462392 729.939