Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05605 ATGCCAGGCTACTATAACTCAATCATTAAGGGTGTATCAACCATCATGGTCTCTTACTCAAGCTGGAATGGAGAAAAGATGCATGCTAATCATGATCTAATCACTGGCTTTCTCAAGAACACACTTTGTTTCAGGGAGGGTCACATGGTTACTCTAAATGTTTATGACCTAAGCCAAGGGCTTGCTCGACAGCTCTCAATGTCTTTTTTGGGGAAGGATATTGAAGGCATTTGGCACACAGGAATTGTGGTTTATGGTAACGAGTATTTCTTTGGTGGGGGCATGCAACATTCTCCTGCTGGATTAACACCATATGAACCAGAAGTACTAGTTGGTGGGAGTGACTTCTATGCATTCCCACGTCTAGATCCTAAAAGTGAAAGAATAGCATGGATACAATGGAGTCACCCCAACATGCCCTGGGATAAATCAGAACTTTGGCCGAACTGGTTATCACAACATGTACAAGGAATACTGAGATACTACTCTAAATGGGAACTTGATAGAACTAGTCCCATAGGACCATCTGAAGCTAGAGTTTATGCCTATACCAAGGTATTCTTTTTTATATCAGCTTTTATATTTCATCCCTTTTAA 597 0.4087 MPGYYNSIIKGVSTIMVSYSSWNGEKMHANHDLITGFLKNTLCFREGHMVTLNVYDLSQGLARQLSMSFLGKDIEGIWHTGIVVYGNEYFFGGGMQHSPAGLTPYEPEVLVGGSDFYAFPRLDPKSERIAWIQWSHPNMPWDKSELWPNWLSQHVQGILRYYSKWELDRTSPIGPSEARVYAYTKVFFFISAFIFHPF. 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05605 198 Pfam PPPDE putative peptidase domain 48 108 IPR008580 GO:0008233
Seca3g05605 198 ProSiteProfiles PPPDE domain profile. 48 198 IPR008580 GO:0008233
Seca3g05605 198 Gene3D PPPDE domains 49 130 IPR042266 -
Seca3g05605 198 SMART DUF862_2a 48 179 IPR008580 GO:0008233
Seca3g05605 198 Gene3D - 1 48 IPR036962 GO:0004553|GO:0005975
Seca3g05605 198 PANTHER PERIPLASMIC BETA-GLUCOSIDASE-RELATED 1 45 - -
Seca3g05605 198 SUPERFAMILY (Trans)glycosidases 1 45 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05605 Seca-Chr3 113290001 113292216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05605 100 153 Carbohydrate Esterase AT5G36210 70.370 3.03e-22 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05605 K22762 - gmx:100787486 119.012