Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05601 ATGGAAGAGGACGATGAGTACAGAAGGAAGTCGAAGATTTTACTCGTTGCCATCTTGCTGGTTGCTACCCTCGCCGTCTTTGCTTCGCTGGTTGCTTTCGCTTACTACTGCCACATCCGCAACAAGGTCTCCAGGCGCCGCAAAAGCCATAAAGTAGTTGAAGACGCTAGCTTTAACGAGAAAAGTGACTTTGCAAACCTGCAAGTTGTTGCTGAGAAAGGACTTCGGGTGTTCACTTTCAAGCAGCTGCATTCTGCTACAGGGGGCTTCAGCAAGTCAAATGTGATTGGTCATGGTGGATTTGGGCTTGTTTACCGGGGAGTGCTCAATGATGGAAGGAAAGTTGCAATTAAATTCATGGATCAGGCAGGAAAGCAAGGAGAAGAAGAGTTTAAAGTGGAGGTGGAATTGCTAAGTCGGTTGCATTCTCCGTATTTGCTGGCATTGCTTGGGTACTGCTCTGATAGTAATCATAAATTGCTGGTGTATGAGTTTATGGCGAATGGTGGCCTGCAGGAACATCTTTATCCCATCAGCAATTCTAATGTTACGCCCATGAAGTTGGATTGGGAAACTCGATTAAGAATAGCACTTGAAGCTGCTAAGGGTTTGGAATATCTTCATGAACATGTCAGTCCCCCAGTGATTCACAGAGATTTTAAGAGCAGCAACATCCTCTTGGATAAAAAATTTCATGCCAAAGTTTCTGATTTTGGATTGGCAAAACTTGGACCTGATAGAGCTGGTGGACATGTTTCAACTCGTGTTTTAGGCACCCAGGGATATGTTGCCCCAGAATATGCACTAACAGGGCATTTAACAACAAAATCAGATGTGTACAGTTATGGTGTTGTACTCTTGGAGCTACTCACTGGCCGAGTTCCAGTTGATATGAAGAGACCTCCAGGGGAAGGCGTTCTTGTTTCTTGGGCTTTGCCCCTGTTGACTGATAGAGATAAGGTTGTAAACATAATGGATCCTGCACTAGAGGGACAATATTCTATGAAAGAGGTTATCCAGGTAGCGGCAATTGCTGCAATGTGTGTGCAACCAGAGGCTGATTATCGGCCTCTCATGGCTGATGTTGTGCAGTCATTGGTTCCACTGGTGAAGACTCACAGGTCCACCTCAAAGTTATTGTATCCTTGA 1149 0.4508 MEEDDEYRRKSKILLVAILLVATLAVFASLVAFAYYCHIRNKVSRRRKSHKVVEDASFNEKSDFANLQVVAEKGLRVFTFKQLHSATGGFSKSNVIGHGGFGLVYRGVLNDGRKVAIKFMDQAGKQGEEEFKVEVELLSRLHSPYLLALLGYCSDSNHKLLVYEFMANGGLQEHLYPISNSNVTPMKLDWETRLRIALEAAKGLEYLHEHVSPPVIHRDFKSSNILLDKKFHAKVSDFGLAKLGPDRAGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKRPPGEGVLVSWALPLLTDRDKVVNIMDPALEGQYSMKEVIQVAAIAAMCVQPEADYRPLMADVVQSLVPLVKTHRSTSKLLYP. 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05601 382 Gene3D Phosphorylase Kinase; domain 1 49 165 - -
Seca3g05601 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Seca3g05601 382 FunFam Receptor-like serine/threonine-protein kinase ALE2 166 379 - -
Seca3g05601 382 FunFam Serine/threonine-protein kinase PBS1 57 165 - -
Seca3g05601 382 Pfam Protein kinase domain 91 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05601 382 ProSitePatterns Protein kinases ATP-binding region signature. 96 118 IPR017441 GO:0005524
Seca3g05601 382 SUPERFAMILY Protein kinase-like (PK-like) 72 366 IPR011009 -
Seca3g05601 382 PANTHER OS07G0668900 PROTEIN 58 374 - -
Seca3g05601 382 Gene3D Transferase(Phosphotransferase) domain 1 166 379 - -
Seca3g05601 382 CDD STKc_IRAK 96 369 - -
Seca3g05601 382 ProSiteProfiles Protein kinase domain profile. 90 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05601 Seca-Chr3 113144340 113150335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05601 1 379 Receptor kinase-like Gene Family AT3G58690 78.364 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Seca3g05601 Pkinase 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05601 - - gmx:100804893 697.582