Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05598 ATGGCTGAGAGAATTTGCATTTATGATGAAGAAAAGAGTGAAGGTAGCGGAGGTGGTGTGGAAGGCAGAATAATCTCTTCTTCTTCTTCTCCAAGTCCTAGAAAGCGTTCTTTCTTGGACTTGAACGAAGAAGCTATGGATGATATTGGAGATGATAGCATGAGTGGTGGTGAGATGTCATCATCACAAGAAGGGAATTTGAGTAGTAGCAATAATAACTCAAGTGATCAAGAAGGGAAAGAGCGTGCAACTACTACAACTACGGTTAGGCAATATGTGAGGTCCAAAATGCCAAGGCTTCGTTGGACTCCTGATCTTCATTTAGCTTTTGTGCATGCTGTTGACAGGCTTGGTGGCCAAGAAAGAGCAACACCCAAGTTGGTTCTCCAGTTGATGAATGTGAGAGGACTTAGCATTGCACATGTGAAGAGTCATTTGCAGATGTATAGGAGTAAAAAGCTTGATGAGTCTGGCCAAGTTTTATCCCAAAATAGGGCAATGCAAGGAAGGCATCATATATTGGATGTGTACGGAAGAGTTAATGGTCAAGGACACTTTGGGGTTGACAACAGGAACTATATGCCTTCATCTCTGATAATGAAACAACCGAATGAACTCAAAGCTCATGGCTCTTCAAGATTTCACCCGACTGGGATTTTCAATAATCACATGATCATGAGATCAAGTTCAATGTGGGACAAAGATTTATATGAGGCAAGTTCACATATATTTGATGTAAGGAATGAAATAGCAAGAAATGGACCTCTTAATCTTAGATCTAACCAACTAGTTGAAGAAAAGAAGTTGGTTCCTCGGGGAATGGCTGGATCACAAGGAAATGATAAACACGAATCTATAAGCATATCTCGGGATGACAAATATGGTGCACAATGGAGAGCCTACTCTACTTCTAACAATAATCAATACTATCAACGTAGTTCCTGCACTTCTATCTTCACTGGCCACGCCAAGATTAATGCTGAGATTCATGATCGAAAAGATCGAATGCCAGAGTTCACAAATCAGTTTCAAGTATCGGAGCAAAGCCATGTGAAAGCCCAATTAGAAAGGTTGAATGAGAAGAAAGTGTCACCAAGTTTTCTAGAGCTAAAGTTAAGTCAGAGTTCAGGAAATGTTAGAGATCACCGGATGAACATAAATTCAGAAAGTGAACAAGAAATCAACACGATACTTTCTCTCTAA 1203 0.4015 MAERICIYDEEKSEGSGGGVEGRIISSSSSPSPRKRSFLDLNEEAMDDIGDDSMSGGEMSSSQEGNLSSSNNNSSDQEGKERATTTTTVRQYVRSKMPRLRWTPDLHLAFVHAVDRLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQVLSQNRAMQGRHHILDVYGRVNGQGHFGVDNRNYMPSSLIMKQPNELKAHGSSRFHPTGIFNNHMIMRSSSMWDKDLYEASSHIFDVRNEIARNGPLNLRSNQLVEEKKLVPRGMAGSQGNDKHESISISRDDKYGAQWRAYSTSNNNQYYQRSSCTSIFTGHAKINAEIHDRKDRMPEFTNQFQVSEQSHVKAQLERLNEKKVSPSFLELKLSQSSGNVRDHRMNINSESEQEINTILSL. 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05598 400 MobiDBLite consensus disorder prediction 1 17 - -
Seca3g05598 400 Gene3D - 97 154 - -
Seca3g05598 400 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 73 265 IPR046955 GO:0003700
Seca3g05598 400 Pfam Myb-like DNA-binding domain 100 150 IPR001005 -
Seca3g05598 400 NCBIfam myb-like DNA-binding domain, SHAQKYF class 98 153 IPR006447 GO:0003677
Seca3g05598 400 MobiDBLite consensus disorder prediction 22 36 - -
Seca3g05598 400 SUPERFAMILY Homeodomain-like 96 152 IPR009057 -
Seca3g05598 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 154 IPR017930 -
Seca3g05598 400 MobiDBLite consensus disorder prediction 1 88 - -
Seca3g05598 400 MobiDBLite consensus disorder prediction 55 88 - -
Seca3g05598 400 FunFam Myb family transcription factor 96 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05598 Seca-Chr3 113018310 113022886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05598 72 159 G2-like Transcription Factor Family AT2G42660 67.045 6.53e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca3g05598 Myb_DNA-binding 2.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05598 - - lang:109337615 420.624