Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05579 ATGGAGGAGACACGAGAAGATGCAGGGCCGGCAGAGCAAGGGCCATCTAATGTTAATGTATCATGGTGGCCTTCAGATTTCGTTGAAAAATTTGGATCTGTTTCTTTGGATTCTCAAGATGAGACGTTAAATAATAAAGAATCTCCTAGACATTGTGACAAAGATGTTTTGTCACCTCTGAAAGCATCACAAATTCTTTGGCGGACTGGAATGCTTTCAGAACCAATACCAAATGGTTTTTATTCAGTCATTCCGGAGACAAGACTCAAGGAACTTTTTTATAGTATTCCTACCTTGGATGAGCTTCATGCTTTGGTTGGAGAGGGTTTTAGGGCTGATATCATACTTGTGGATTCGGAGAAAGATAAAAAGCTATCCATGTTGAAGCAACTGATTGTGGCATTAGTTAAAGGATTAAACTCAAATCCAGCGGCAATAATTAAGAAGATAGCTGGATTAGTTTCTGATTTTTATAAGCGACCCAATGTGGAAAGTCCAGCAAAAGCTGCATTAGATGAAACCTCCCACATGTTTGAGAATCGAGGGGTCCAGATGCTGGGGCAAATAAAGCATGGTTCATGCCGTCCTCGAGCTATATTATTTAAAGTATTAGCTGATACTGTAGGCCTTGAAAGTAGGCTCATGGTGGGCTTGCCAAATGATGGGGCTGTTGAATGTGTAGATTCATACAAGCATATGTCTGTGATAGTTGTACTGAATTCTGTGGAAATGCTGGTTGATCTTATGCGATTTCCGGGCCAATTGTTACCAAGATCAACCAAGGCAGTCTTTATGACTCATATTTCTGCAGCAGGAGAGAGTGATTCAGCAGAAAATGATTCTTGTGATTCGCCATTAGAACCAAACAGTCCCTTATTTGGGGTTTCAGAGAGTGCTGAGAAGGAGGAAAACCTCCAATTTCATAGAAAATTTGAAGTGTCTTCAAATGTTTCAGGCCTTTCCTTGAGAAACATGATGTTACGGTCAAATAGTAGTTTGAGTTTGTCTCATAGTGAACCCAACATTGCAACTGTATTTGGTCGGCGTAGTCGGAAAAAGGTCATTGCTGAGCAGAGGACAGCTAGTTCAAGTCCAGAACATCCATCATTTCGAGCACGTGGACGGTCCCTACTTAGTGGTGATAGGACATCTTTTAGAGATTTTGCAGATGATCAGGCTACATCAAGATCCAGCTATAGGTCAGATGGTGCATCCTCATCAGAAGCTCGTAGGATACGAAGAAGAAGCATCAGTATTACGCCAGAGATTGGTGATGATATCGTAAGGGCTGTACGGGCCATGAATGAAACACTAAAGCAAAACCGTCTTCTGAGAGAACGAGGAGATGATAATTCATTACCCCATTCTCCAAACAATAGAAGTAATGATTCAAATCTTCAGAAAAATGTGCCAAATTTCCATCTTGACGGTCATGATGAAAGGTCCACCTTATCTTCTCATCAACATGACCAAGTGACTTCCCAAAAGGCAGTGTCATTACCGTCTTCACCGCATGACTATAGAGGTCAAACTTCTGGGAGAAGCGGCCCATCCAGATATGGAGTGAATGATGAAATGGAGTCGACTTGGAATAAAGTACTTGAATCTCCAATGTTCAATAATAAACCTCTATTACCATATGAAGAATGGAATATTGACTTCTCAGAATTAACTGTTGCAACTCGTGTGGGGATTGGCTTCTTTGGAGAAGTCTTCCGTGGCGTATGGAATGGCACAGATGTAGCAATCAAGGTTTTTCTAGAGCAAGATTTAACTGCTGAAAACATGGAAGATTTCTGCAATGAGATATCTATTCTGAGCCGGCTTCGACACCCTAATGTTATCTTATTTCTTGGTGCTTGCACAAAGCCTCCACATCTGTCAATGGTTACAGAATATATGGAGATGGGATCATTGTATTACTTGATACATTTGAGTGGCCAAAAGAAAAAGCTCAGTTGGCGGAGAAGACTAAGGATGTTGCGTGACATATGCAAGGGTTTGATGTGCGTACACCGTATGAAGATTGTTCACCGTGATCTAAAAAGTGCAAATTGCCTAGTGAATAAGCATTGGACCGTGAAAATATGTGATTTTGGGCTTTCTAGAATAATGATAGATTCTCCCATGAGAGATTCTGCTTCCGCTGGAACCCCGGAATGGATGGCTCCTGAACTCATCCGAAATGAACCGTTCACTGAAAAATGTGATATCTTTAGCCTTGGGGTGATAATGTGGGAGCTGTGCACCCTGAACAGACCATGGGAAGGCGTACCACCTGAGAGGGTGGTCTATTCCGTTGCTCATGAGGGTTCCAGATTGGAGATTCCTGAAGGCCCGCTAGGCAGGCTGATTTCAGACTGTTGGGCAGAATCACATGAGCGGCCAAGTTGTGATGAGATTCTTTCTCGTTTGGTGGACATTGAATACTCATTGTGCTGA 2442 0.4222 MEETREDAGPAEQGPSNVNVSWWPSDFVEKFGSVSLDSQDETLNNKESPRHCDKDVLSPLKASQILWRTGMLSEPIPNGFYSVIPETRLKELFYSIPTLDELHALVGEGFRADIILVDSEKDKKLSMLKQLIVALVKGLNSNPAAIIKKIAGLVSDFYKRPNVESPAKAALDETSHMFENRGVQMLGQIKHGSCRPRAILFKVLADTVGLESRLMVGLPNDGAVECVDSYKHMSVIVVLNSVEMLVDLMRFPGQLLPRSTKAVFMTHISAAGESDSAENDSCDSPLEPNSPLFGVSESAEKEENLQFHRKFEVSSNVSGLSLRNMMLRSNSSLSLSHSEPNIATVFGRRSRKKVIAEQRTASSSPEHPSFRARGRSLLSGDRTSFRDFADDQATSRSSYRSDGASSSEARRIRRRSISITPEIGDDIVRAVRAMNETLKQNRLLRERGDDNSLPHSPNNRSNDSNLQKNVPNFHLDGHDERSTLSSHQHDQVTSQKAVSLPSSPHDYRGQTSGRSGPSRYGVNDEMESTWNKVLESPMFNNKPLLPYEEWNIDFSELTVATRVGIGFFGEVFRGVWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPHLSMVTEYMEMGSLYYLIHLSGQKKKLSWRRRLRMLRDICKGLMCVHRMKIVHRDLKSANCLVNKHWTVKICDFGLSRIMIDSPMRDSASAGTPEWMAPELIRNEPFTEKCDIFSLGVIMWELCTLNRPWEGVPPERVVYSVAHEGSRLEIPEGPLGRLISDCWAESHERPSCDEILSRLVDIEYSLC. 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05579 813 Gene3D Transferase(Phosphotransferase) domain 1 636 811 - -
Seca3g05579 813 SMART serkin_6 557 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05579 813 Gene3D Phosphorylase Kinase; domain 1 550 635 - -
Seca3g05579 813 FunFam Serine/threonine-protein kinase isoform 1 547 635 - -
Seca3g05579 813 Pfam Protein tyrosine and serine/threonine kinase 558 805 IPR001245 GO:0004672|GO:0006468
Seca3g05579 813 Pfam Ethylene-responsive protein kinase Le-CTR1 62 255 - -
Seca3g05579 813 SUPERFAMILY Protein kinase-like (PK-like) 531 805 IPR011009 -
Seca3g05579 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 676 688 IPR008271 GO:0004672|GO:0006468
Seca3g05579 813 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 353 805 - -
Seca3g05579 813 MobiDBLite consensus disorder prediction 1 21 - -
Seca3g05579 813 MobiDBLite consensus disorder prediction 353 413 - -
Seca3g05579 813 CDD STKc_MAP3K-like 563 805 - -
Seca3g05579 813 MobiDBLite consensus disorder prediction 487 523 - -
Seca3g05579 813 MobiDBLite consensus disorder prediction 440 523 - -
Seca3g05579 813 ProSiteProfiles Protein kinase domain profile. 557 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05579 813 ProSitePatterns Protein kinases ATP-binding region signature. 563 584 IPR017441 GO:0005524
Seca3g05579 813 MobiDBLite consensus disorder prediction 390 405 - -
Seca3g05579 813 MobiDBLite consensus disorder prediction 454 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05579 Seca-Chr3 112806566 112829224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05579 1 813 MAP Kinase Kinase Kinase AT3G58640 72.155 0.0 1203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-1 Seca3g05579 PK_Tyr_Ser-Thr 5.4e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05579 - - gmx:100803469 1464.13