Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05578 ATGCACTCCATCGACGGAGCTCCGCCTCAAGCCACCGCACCTCCGTCGTATCGGCCGTCTCCGTTCCCCGGACGGGAAGACTGCTGGTCTGAGGAGGCTACGTTCACCCTCGTTGACGCCTGGGGAGAACGCTACCTCGAGCTCAACCGCGGCAACCTCCGCCAGAAGCACTGGCAGGAGGTCGCCGACGCCGTCAACGACCGCCACGGCCACGACAGGAAGGCTCGCCGCACCGACGTCCAGTGCAAGAACCGAATCGACACGCTCAAGAAGAAGTACAAGATCGAGAAAGCTAGGGTTTCTGAATCCGGCGTTTACGCCGGCACCTGGCCGTTCTTTCGCCGCCTCGATTTCCTCATCGGAGACACTTTTCCGGCGAAGAGGCCATCACCGCCGGACATCAGCAATGAGCGCCGGAACGTCTCTCCCGTTAAGTCCCCGGCCTGGGCGCTTGTGCCGGTTGGTCCGCGATCAGCCACTCAGAAACGGCTGCCGGCGACGGCAACGGCAACAGAGACATCCCTGATGAGTGTGGAGAATTCAAACTTCCGGCGGAATTTCTCAGCCTTTGCTGCTGCAGCTGCTGCGGCAGCGGAGGCGGACAGTGAGAATTCGAATGGTTCAAAGTGGAGCAATGGGAGCGGGAAGAGGAAGAGGAAGAGGAAGAGGGGAAGGGATTGGGAATTTGGATACAAGGAGGTTGCAGAAGCCTTAGAAAGGTTTGGAGATATATACGAGAGAGTGGAGGCAGCGAAACAGAGGCAAATGGTGGAGTTGGAGAAACAGAGGATGCAATTTGCTACTGATCTGGAGTACCAGAGAATGCAGCTCTTCATGGAAACGCAGGTTCAACTGCAAAAAATCAACTGCTCTAAGCGATCTTCTGCATCTGGTGAGCCTCTTTTCTTTCTTTCTACTTTTAATGCAAATTTATGTTTCTAA 942 0.5573 MHSIDGAPPQATAPPSYRPSPFPGREDCWSEEATFTLVDAWGERYLELNRGNLRQKHWQEVADAVNDRHGHDRKARRTDVQCKNRIDTLKKKYKIEKARVSESGVYAGTWPFFRRLDFLIGDTFPAKRPSPPDISNERRNVSPVKSPAWALVPVGPRSATQKRLPATATATETSLMSVENSNFRRNFSAFAAAAAAAAEADSENSNGSKWSNGSGKRKRKRKRGRDWEFGYKEVAEALERFGDIYERVEAAKQRQMVELEKQRMQFATDLEYQRMQLFMETQVQLQKINCSKRSSASGEPLFFLSTFNANLCF. 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05578 313 Pfam Myb/SANT-like DNA-binding domain 26 118 IPR044822 -
Seca3g05578 313 Gene3D - 29 95 - -
Seca3g05578 313 FunFam trihelix transcription factor ASIL2 29 95 - -
Seca3g05578 313 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 11 292 IPR044823 -
Seca3g05578 313 MobiDBLite consensus disorder prediction 201 222 - -
Seca3g05578 313 Coils Coil 245 265 - -
Seca3g05578 313 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05578 Seca-Chr3 112758360 112759301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05578 218 288 Trihelix Transcription Factor Family AT3G14180 40.845 1.19e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca3g05578 Myb_DNA-bind_4 3.4e-26 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05578 - - gmx:100784918 384.415