Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05551 ATGGAAATGGAGGCTTTTGCCCCACAAAGGATTGGTGATGGTTTTCAAGTGAGTTCCGGTTTAATTGGAAGTGGGTATGCTTCATCTTCGTCTCTAGTTTTGGATAGGGAGAAAGGAGAGCTTGTGGAAGCCCCTGTCAAGTTGGAACGCAAGGGTGTGTCCCCTGAAAGAAGTCTTGAAGCCTTGAAGAACCATAGTGAGGCAGAACGGAGGAGAAGGGCAAGAATTAATGCACATCTTGATACCCTTCGCAGTGTGATTCCAGGTGCTAAGAAGCAGTTGGACAAAGCATCCTTACTGGCTGAGGTTATTACACATTTGAAAGAGCTGAAAACGAATGCAGCACAAGCTAGTGAAGGCTTAATGATACCAAAGGACAATGATGAGATAAGAGTTGAAGAACAGGAAGGTGGGCTGAATGGTTTCCCCTATTCAATTAGAGCATCCCTATGTTGTGAATATAAACCTGGGCTATTGTCTGATATAAGACAAGCACTTGATGCACTTCATCTTATGATAATAAGGGCAGAGATTGCAACCTTAGGAGGTAGAATGAAGAATGTCTTTGTGATTATTAGCTGCAAAGATCAGAACTTTGAAGATGCTGAATACCGGCAGTTTCTGGCTGGCTCTGTTCACCAAGCTCTTAGATCTGTACTTGATAGATTTTCTGTTTCACAAGATATCTTAGAAACCAGAAAGAGAAGGAGGATTTCTATATTCAGTTCTTCATCTTTAGGAGATTTCTTGTGA 753 0.4197 MEMEAFAPQRIGDGFQVSSGLIGSGYASSSSLVLDREKGELVEAPVKLERKGVSPERSLEALKNHSEAERRRRARINAHLDTLRSVIPGAKKQLDKASLLAEVITHLKELKTNAAQASEGLMIPKDNDEIRVEEQEGGLNGFPYSIRASLCCEYKPGLLSDIRQALDALHLMIIRAEIATLGGRMKNVFVIISCKDQNFEDAEYRQFLAGSVHQALRSVLDRFSVSQDILETRKRRRISIFSSSSLGDFL. 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05551 250 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 62 119 IPR036638 GO:0046983
Seca3g05551 250 PANTHER TRANSCRIPTION FACTOR BHLH30 26 242 IPR045847 GO:0003700|GO:0006355
Seca3g05551 250 Gene3D - 56 119 IPR036638 GO:0046983
Seca3g05551 250 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 60 110 IPR011598 GO:0046983
Seca3g05551 250 Pfam Helix-loop-helix DNA-binding domain 64 110 IPR011598 GO:0046983
Seca3g05551 250 SUPERFAMILY ACT-like 149 226 IPR045865 -
Seca3g05551 250 SMART finulus 66 116 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05551 Seca-Chr3 111911576 111914191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05551 47 239 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 41.117 2.22e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g05551 HLH 7.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05551 - - gmx:100783322 412.535