Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05548 ATGACCAAAGCTGAAATGAACCATAATGATAATGAGCAACCTAAAAATTTGGAATCTAATGATGAAGGCTTGGTTCATACTGATGAGCAAGGTGGTCAACAATCTTATCAACAAGCTGAATGTTTAAAAAAGATAAATGAACTTACAGATTATGAAATTAGGGCCCTTGAGTTTGATTCGGAATATCATGCTTATGAATTCTATTCTGAGTATGCTAAAGTGATAGGATTTGTTGTCAGGAAAGGTGAAGTTTATCGTGATCGTAATGATGCTATCACAATGAGGCAATTGGTTTGTAATAGGCAGGGAGAGAGATGTGAGAAGCATTTAAATAGAACTGATAGAGTAAGGGAGGCTAAGCCAATAACTCGTACCAAATGTAATGCTAGGATTCATGTTCACTTAAACTATAAGACTAGGAAATGGAGGGTTGGCTTGTTTGAACCAGCTCATAATGATGAGTTGACTCCTGCAAATATGGTTCATTTGCTTCCTGCATATCGTGGCTTGAGTTTTGCAGATAAGGCACAGGTAAATGGTCTTCACTCACATGGTGTGAGGACTTGCCATATTATGGGGCTAATAATGGGTCGAAGGGTGGTTATTCTGATTTGGGGTTTTGTAAGAAAGATTTGTATAATCACATTGATAAGGAGAAAAGGGAACGATTAA 672 0.3735 MTKAEMNHNDNEQPKNLESNDEGLVHTDEQGGQQSYQQAECLKKINELTDYEIRALEFDSEYHAYEFYSEYAKVIGFVVRKGEVYRDRNDAITMRQLVCNRQGERCEKHLNRTDRVREAKPITRTKCNARIHVHLNYKTRKWRVGLFEPAHNDELTPANMVHLLPAYRGLSFADKAQVNGLHSHGVRTCHIMGLIMGRRVVILIWGFVRKICIITLIRRKGND. 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05548 223 Pfam FAR1 DNA-binding domain 66 156 IPR004330 -
Seca3g05548 223 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 9 195 - -
Seca3g05548 223 MobiDBLite consensus disorder prediction 1 25 - -
Seca3g05548 223 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05548 Seca-Chr3 111840207 111840878 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g05548 FAR1 2.4e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05548 - - ccaj:109792835 184.882