Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05532 ATGGGAATGAAGAGCACAGGAGGAGAGATTGTTCAAGTCCAAGGAGGCCACATTGTTCGATCCACAGGTAGAAAAGATCGTCACAGTAAAGTTTACACTGCAAAAGGACCTCGTGATCGCAGGGTTAGGCTATCAGCACACACAGCTATTCAATTCTATGATGTTCAAGACCGTCTTGGCTATGACAGACCCAGTAAGGCTGTGGATTGGCTCATCAAAAAGGCAAAATCTGCCATTGATAAGCTTGCTGAGCTTCCTCCATGGCACCCAACTCCTACTAATAATGTCACAGAAGAAGGCCAAGAGACAGAACAGAATGCAGGGTCAAGTGAAATGGCTATTGCAGCAGAACACTCTGAGTCTTCTGGTTACAATTTTCAGCTCCAAAGGCAATTAGGTGAGGACCCAGATAACCATCACTCAGCTTTTATTCCTTCACCTATTGACACTGATGCCATAGCCTTTTTTCCCACAACCTCAGCTACTTCCTCTATCAATTTTCAAAGCTACCCTCCTGATATAATCTCTAGAAACAATAACTCCACACAGGACCTTGGTCTTTCTCTTCATTCTTTTCAAGATCCTGGTTTGATTCATGGCCAATCCCAAGGTGGTGCTAATCAAACACCTTCTAATGACCAAACCCTTTTCTCTGGCTCAACCCCTGTTGGGTTTGATGCCAATTATCACAGGATTGTGACTTGGAACAATGATGCAACTACAGATATGAACAGAACCGGGTTCATGGTCAATTCACCTGCATTTCTAGGCCAAGGTTCACAATATTCCCATAGGGGGACCCTTCAGTCCAGTTTTTCACCATCACTTCGTCCTTGGAATGATATTCCAATGGCTTCCTCAGATCATCACAATCATCATAAGACTCAACCAATTCACCAAGCTTCCATCTTTGGTAGCAGGTTTCTGTCTGATGCATTACCTGGTTTCTGCATTCCTGCTAGAATTCAAGGTGAGGATGAGAGCCATGGTGTTGGTTCTGACAGGCCATCATCTTCTCCTCCTAATTCTCATCACTGA 1038 0.4422 MGMKSTGGEIVQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLAELPPWHPTPTNNVTEEGQETEQNAGSSEMAIAAEHSESSGYNFQLQRQLGEDPDNHHSAFIPSPIDTDAIAFFPTTSATSSINFQSYPPDIISRNNNSTQDLGLSLHSFQDPGLIHGQSQGGANQTPSNDQTLFSGSTPVGFDANYHRIVTWNNDATTDMNRTGFMVNSPAFLGQGSQYSHRGTLQSSFSPSLRPWNDIPMASSDHHNHHKTQPIHQASIFGSRFLSDALPGFCIPARIQGEDESHGVGSDRPSSSPPNSHH. 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05532 345 MobiDBLite consensus disorder prediction 90 106 - -
Seca3g05532 345 Pfam TCP family transcription factor 23 119 IPR017887 -
Seca3g05532 345 MobiDBLite consensus disorder prediction 325 345 - -
Seca3g05532 345 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
Seca3g05532 345 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 19 281 IPR005333 GO:0003700
Seca3g05532 345 MobiDBLite consensus disorder prediction 84 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05532 Seca-Chr3 111263602 111266659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05532 8 345 TCP Transcription Factor Family AT3G15030 43.860 9.79e-77 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca3g05532 TCP 1.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05532 - - gmx:100814907 589.341