Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05528 ATGGGTGACTCCGATGACGATCGCGACCGTGACCCATTCAGCAATTTCGGTCGCTACTCAGACCACAGCGACTTCAACAGGCGAATCATGCTCATGGCCATAGTTTCCCTATCAGTAGTCTTAGTTTTGGTGTTAGCGCTTCACCTCTATGCAAGGTTCATCCTTAAACGCCAAGCTCGCCGTAGAGCCGCAATTCACCAACTTAGCCTCACCGTGGCTCATGCTCACACCCAATTCACCGAACCACCCAACAGAGGACTCGACCCTACCGTCATCGCGGCTCTTCCCACCTTCGTCTTCAAAAGAAAGGTACCTCAAAAAGAACAAGAAGAAAACCGCCACAATCATGGTGATTATTCATCTAGTGTGATTGAATGTGCGGTGTGCTTGAGTGCTTTAGAAGATGAAGAAACCGTGCGGTTGCTTCCCAATTGCAAGCACACTTTCCACGTTGGTTGCATTGATACGTGGCTCGCTTCGCATTCCACGTGTCCAATTTGTCGAACCAAGGCTGAGCCTCAGCTTGAACCGCACCCACGTGAGGGGCCCACTGGGTTGGGTCTTAATGCTGCACCGTCTGCTCCGGTTTTGATTGAACCACTCGCTGAAGGCACATCAGACGGTGCTAGTGGTACTATTAGTGGGTCACCCAAAATCAATGGCTCAAATTCACGGTTGAGCTCGTTCCGAAGGATTCTTAGTAGAGAGAGATCGTTCAGGAGAATTCAACCTTCTAGCCGTGAAGATATTGATCAAGATTTAGAGAGGCAGTGA 774 0.4974 MGDSDDDRDRDPFSNFGRYSDHSDFNRRIMLMAIVSLSVVLVLVLALHLYARFILKRQARRRAAIHQLSLTVAHAHTQFTEPPNRGLDPTVIAALPTFVFKRKVPQKEQEENRHNHGDYSSSVIECAVCLSALEDEETVRLLPNCKHTFHVGCIDTWLASHSTCPICRTKAEPQLEPHPREGPTGLGLNAAPSAPVLIEPLAEGTSDGASGTISGSPKINGSNSRLSSFRRILSRERSFRRIQPSSREDIDQDLERQ. 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05528 257 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Seca3g05528 257 SMART ring_2 126 167 IPR001841 -
Seca3g05528 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 174 IPR013083 -
Seca3g05528 257 MobiDBLite consensus disorder prediction 207 224 - -
Seca3g05528 257 Pfam Ring finger domain 125 168 IPR001841 -
Seca3g05528 257 CDD RING-H2_EL5-like 125 168 - -
Seca3g05528 257 SUPERFAMILY RING/U-box 125 176 - -
Seca3g05528 257 MobiDBLite consensus disorder prediction 202 224 - -
Seca3g05528 257 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 23 207 - -
Seca3g05528 257 FunFam E3 ubiquitin-protein ligase ATL6 75 174 - -
Seca3g05528 257 MobiDBLite consensus disorder prediction 237 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05528 Seca-Chr3 111158459 111159646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05528 4 257 C3H Transcription Factor Family AT2G42360 44.444 4.48e-59 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05528 K19038 - gmx:100796057 260.381