Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05525 ATGGCACAATTACCTCCAAAGATTCCAAACATGTCACCTAGTTGGCCAGACTTTTCTTCTCATCAAAAATTGCCAACATCCCTTGCAAGCATGTCACCACCAAACAACATGGCAACAACAAACACAAACCATTACCATAATCAGAGCCAGAACCCTTCATGGGTGGATGAGTTTCTTGACTTTTCCTCTGCCAGGCGTGGTGCTCACCGCCGGTCGGTGAGTGATTCCATTGCCTTCCTTGAGGCACCAATGCTTGATGATGATCATGAACATTGTCGTACCAAACATGGGAACATTAATAATGAGAATGAGTTTGACAAGTTTGATGATGAACAATTCATGAACATGTTCTCTGATGAAATCTCTGGGGTCCACAATATGCCACCAACATTGTCCTCTTCCAATCCTTCAAGTCCTTCGGATCAGAATTTCTTCAATGATGAGAAAGAGAACACGCAGGAGAAGGAGCAGAAGAAGGAGGAGGAAGTTGAAGAGTATCAGCTTCAGCAATTGAAAAATGAGCCAGATGAGGTTGAAAGCGAATGCAATCAGGAAATTCCACAGGCTACAAATAATACCAATGCTTCTTCTTCTAATGACAGAATCACTGACCCCAAGAGAGTCAAAAGAATCTTGGCAAATAGGCAATCTGCGCAGAGATCGCGAGTGAGGAAGCTGCAATACATATCAGAGCTGGAGAGAAGTGTAACTTCATTACAGGCTGAGGTTTCAGTGCTGTCTCCGCGGGTTGCATTTTTGGATCATCAACGCTTGCTTCTAAATGTTGACAACGGTGCTCTCAAGCAAAGAATCGCTGCCCTTGCTCAAGACAAGATCTTCAAAGATGCTCATCAAGAGGCACTCAAGAGAGAGATAGAGAGACTGAGGCAAGTGTATCACCAACAGAGCCTCAAGAAGATGGAAAATGCTGCAGGCTCACCATCACCAAAGCCAATATATGATACTCAGCCAGAAAAGGAACAACTTCTCAATGTATGA 999 0.4384 MAQLPPKIPNMSPSWPDFSSHQKLPTSLASMSPPNNMATTNTNHYHNQSQNPSWVDEFLDFSSARRGAHRRSVSDSIAFLEAPMLDDDHEHCRTKHGNINNENEFDKFDDEQFMNMFSDEISGVHNMPPTLSSSNPSSPSDQNFFNDEKENTQEKEQKKEEEVEEYQLQQLKNEPDEVESECNQEIPQATNNTNASSSNDRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNGALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQSLKKMENAAGSPSPKPIYDTQPEKEQLLNV. 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05525 332 MobiDBLite consensus disorder prediction 13 49 - -
Seca3g05525 332 MobiDBLite consensus disorder prediction 1 49 - -
Seca3g05525 332 CDD bZIP_plant_RF2 207 257 IPR044759 GO:0003700|GO:0006355
Seca3g05525 332 PANTHER BASIC LEUCINE ZIPPER 34 1 316 - -
Seca3g05525 332 Gene3D - 205 273 - -
Seca3g05525 332 MobiDBLite consensus disorder prediction 147 179 - -
Seca3g05525 332 MobiDBLite consensus disorder prediction 125 146 - -
Seca3g05525 332 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 209 224 IPR004827 GO:0003700|GO:0006355
Seca3g05525 332 SMART brlzneu 202 266 IPR004827 GO:0003700|GO:0006355
Seca3g05525 332 MobiDBLite consensus disorder prediction 183 201 - -
Seca3g05525 332 Coils Coil 142 174 - -
Seca3g05525 332 Coils Coil 285 305 - -
Seca3g05525 332 MobiDBLite consensus disorder prediction 121 205 - -
Seca3g05525 332 SUPERFAMILY Leucine zipper domain 206 260 IPR046347 GO:0003700|GO:0006355
Seca3g05525 332 FunFam Basic leucine zipper 61 205 278 - -
Seca3g05525 332 MobiDBLite consensus disorder prediction 303 332 - -
Seca3g05525 332 Pfam bZIP transcription factor 206 249 IPR004827 GO:0003700|GO:0006355
Seca3g05525 332 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 204 256 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05525 Seca-Chr3 111097458 111102378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05525 1 283 bZIP Transcription Factor Family AT3G58120 56.250 6.80e-97 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca3g05525 bZIP_1 3.3e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05525 - - gmx:100101874 442.195