Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05522 ATGGAAAAAGGTTTTGAGGAATTGTCAAATGGTGATGGTAATAGTGGCACCAATGAAGTATGTGGTAGTGTTGAGGCATGTGAGGGACCTAAAAATGTTACTGAGTTGACAGTTGAAGAGATTATGTCTCTTGAATTTGATTCAGAGGAAGATGCTTTTAATTTTTACACAAATTATGCTAAAGTAGTTGGGTTTTCAGTAAGAAAAGATGACGTCTATCGTGATGATCGGTATGGGATTGTTATGAGAAACATGGTATGTAATAGGCAAGGAGAGAGGTCTGAGAAGAACATGCAAAGGAAGGATAGGTGTCGTGAACCAAGGGCCATTACCCGCACACGTTTCCATGCAAGGCTCCGTGTTCGTTTAGGTTACTTGAGTGGAAAATGGACAATTACTCATTTTGAGCCCAATCATAATCACGAGTTGACCCCATCAACATATGTCCATTTGATTTCTTCAAATAGAGGTCTTTCTGAGGGTGATAAGGCTCAAGTGAATAGTTTGCACATATATGGTGTTCGTACTTGTCATATTTTGGGTTTCATTTTAGGTCAGAAAGAGGGGTATGCAGATCTTGGCTTTTGCAAAAAGGATTTGTACAATCATATAGATAAGGACAAAAGGGCTAAAATTAAGGATGGTGATGCTTTTGCTGCCTTATGTTACCTTCAGGGTTTAGTTCAGAAAGTGGATAAGTTAGAAAGTAAGATGGAAAGGGTTATAAGTGCCCTAAATGAACTGACTGAAATTGTGCTTAGAAAAAAATCTTATGAAGATCCTTTTGATTCACCAACAAATTTAATTTCACTAAAGGGATTGGAATTGCGATCTGCTTCAAAGTTGAATAAAGAAGGTAAAAGTGCAGCAACTGAGAGGATCATGAAAAAGTTATGTGAAGTTCAAAATGAAACAGTCGTGTTGAATGACAAACCAGTACCAAAAAATTTTCGAGCATTAGTATCTAAAATTTCCAGCAAGAAACTTTTCTACCCCGTAAACAATGCCAACATACGTAACAAGGTCTTATTAACCACTGCATCTCCATCAGGATTCTACATTAGTCCTCGTAATGAAGATGACATTCCTCGCACTTTAATAGGACCATCTATTCCGAAGGCACTTTGTTCCATGTTTTCACCTCGGTCACCCTTACAACTATCTCAAACTGAAGTTGAAGTTGCTTCATATGTTTTTTGTAGAGACATGAGTGATGACATGGTTTGTGGAGAGGTATTGATATCAACAGATGTGAACTTTTGTGATGGAACAACAACAGTTCTCCAATGTTTAAAGCCTAAGCAAGCACTGAAGCAGGATGAACGTTTCATGAGTCGTGTTGACATGCTTTCAAAGATTTTTGTGCTGATTAACAACAACAACAACCACTGGTTCCTGCTGGTAATTGATATTCTGGAGAAAGAATTGATATATCTTGACTCATACCCGGATGAAACAAGATTTGAAGAAAGTGATCTGCTGCAACATCCATCATTTTATCAAATAGAATTAACTCAAAAACCATTGGTGTCTGAGTTTGAAATAATCATTCCAAACACTGAAGTGATTCAAGGGGGTGATTCAAATGACTGTGGAGTTTGGGTTGCAATGTGGATGAAACAACAGAGAATTAATGGCTACAGATTGAAGGCAAGAATTAATATGTCAATTTTTTCTATTTTTTAA 1686 0.3713 MEKGFEELSNGDGNSGTNEVCGSVEACEGPKNVTELTVEEIMSLEFDSEEDAFNFYTNYAKVVGFSVRKDDVYRDDRYGIVMRNMVCNRQGERSEKNMQRKDRCREPRAITRTRFHARLRVRLGYLSGKWTITHFEPNHNHELTPSTYVHLISSNRGLSEGDKAQVNSLHIYGVRTCHILGFILGQKEGYADLGFCKKDLYNHIDKDKRAKIKDGDAFAALCYLQGLVQKVDKLESKMERVISALNELTEIVLRKKSYEDPFDSPTNLISLKGLELRSASKLNKEGKSAATERIMKKLCEVQNETVVLNDKPVPKNFRALVSKISSKKLFYPVNNANIRNKVLLTTASPSGFYISPRNEDDIPRTLIGPSIPKALCSMFSPRSPLQLSQTEVEVASYVFCRDMSDDMVCGEVLISTDVNFCDGTTTVLQCLKPKQALKQDERFMSRVDMLSKIFVLINNNNNHWFLLVIDILEKELIYLDSYPDETRFEESDLLQHPSFYQIELTQKPLVSEFEIIIPNTEVIQGGDSNDCGVWVAMWMKQQRINGYRLKARINMSIFSIF. 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05522 561 MobiDBLite consensus disorder prediction 1 21 - -
Seca3g05522 561 SUPERFAMILY Cysteine proteinases 428 542 IPR038765 -
Seca3g05522 561 ProSiteProfiles Ubiquitin-like protease family profile. 336 542 IPR003653 GO:0006508|GO:0008234
Seca3g05522 561 Gene3D Adenoviral Proteinase; Chain A 394 555 - -
Seca3g05522 561 Pfam Ulp1 protease family, C-terminal catalytic domain 446 539 IPR003653 GO:0006508|GO:0008234
Seca3g05522 561 PANTHER OS01G0519700 PROTEIN 38 226 - -
Seca3g05522 561 Coils Coil 224 251 - -
Seca3g05522 561 Pfam FAR1 DNA-binding domain 54 144 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05522 Seca-Chr3 111036023 111039276 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g05522 Peptidase_C48 3.6e-08 CL0125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05522 - - ccaj:109792835 221.476