Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05513 ATGGATGATGGAGAAATTTCAAACGCTTTCCCTCTTCATCAAAACGCAACCGTTTCATCTCCTCCTGTTTTGAAGAGGAAGAGAAACCTCCCTGGCAACCCAGATCCTGAAGCTGAAGTGATAGCTTTATCACCAAAGACTCTGATGGCTACAAACAGATTTGTTTGTGAAATTTGCCTGAAGGGTTTCCAAAGGGATCAAAATCTTCAACTCCATAGACGTGGACATAACCTTCCTTGGAAGCTTAAGCAGAGGACAAGCAAAGAAGTAAGGAAGAGAGTGTATGTGTGTCCAGAGAAAACTTGTGTCCACCACCATCCTTCAAGGGCTCTTGGAGACTTAACTGGGATCAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGAGAAGTGCTCAAAGCGTTATGCTGTTCAATCAGATTGGAAAGCACACTCAAAAACCTGTGGTACCAGAGAATACAAATGTGACTGTGGAACTATCTTTTCACGGAGGGACAGCTTCATCACACACAGGGCTTTCTGTGATGCCTTAGCAGAAGAAACAGCAAGGGTAAATGCAGTATCAAATATAAACAACCCATTGGGGAGTTACAACATCATGCAACAAACTTCCCTTGGTCCTAACATGCCAACCCATTTTTCTTCAATTTTCAAGCCAATTTCATGCACTGAGGAAACAGGTAACAATCAAACATCTAGAGGGTTATCCCTTTGGATGGCTCAAGCATCTCAGGCTCATGAGACAATGACAATAAACAACAACAATTTGCATGAGATTCATCAACTTGGGTCAACTACAACCCCACCTGGAGCAATATACCCAATTAATGTTTCATGCTCAAACCCACCACCCTCTAATTATCAACTAAATTGGGTGTTTGGAAATAATAAGCTCTCATCTAATGGAACTCAAGAGCTAACTAGCACTACTACTGTTTCACTTCCATTAGTGAATATTGCTAAGGATACTACAATTACTACAAACCAGCTTATTAGTGTTCCTTCCTTGTATAGCTCCCAACATCAATCCCATCAAACAACCTCAGCTGCAAACATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCTCAAATTGGAACAACCTCAACTGACCCATCATTCCTTGGGAGTTTAGGATTGAGATGCAATAACAACAGTAGTCCGAGGCAAGATGGGAACAAATTTTGTGGGGTGGTGTACGGTTCAAGTTCAGTGCCAGAGAAATTATATCAAGATGATTTGACACAAATGCCCCAAACAAAACGACGCCACGTGCAGAATGAAGAGAGTGGTGCATGGGGACAAACTAGGGATTTTCTTGGTGTTGGCGGTGCCAGCCATTTGTCACCCTTCATCAATCAACGGATGGATTTTATTTGA 1389 0.4233 MDDGEISNAFPLHQNATVSSPPVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAVSNINNPLGSYNIMQQTSLGPNMPTHFSSIFKPISCTEETGNNQTSRGLSLWMAQASQAHETMTINNNNLHEIHQLGSTTTPPGAIYPINVSCSNPPPSNYQLNWVFGNNKLSSNGTQELTSTTTVSLPLVNIAKDTTITTNQLISVPSLYSSQHQSHQTTSAANMSATALLQKAAQIGTTSTDPSFLGSLGLRCNNNSSPRQDGNKFCGVVYGSSSVPEKLYQDDLTQMPQTKRRHVQNEESGAWGQTRDFLGVGGASHLSPFINQRMDFI. 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05513 462 FunFam protein indeterminate-domain 5, chloroplastic-like 108 187 - -
Seca3g05513 462 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 76 IPR013087 -
Seca3g05513 462 FunFam protein indeterminate-domain 12-like 33 101 - -
Seca3g05513 462 MobiDBLite consensus disorder prediction 1 34 - -
Seca3g05513 462 Gene3D Classic Zinc Finger 87 178 - -
Seca3g05513 462 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 449 IPR031140 -
Seca3g05513 462 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Seca3g05513 462 SUPERFAMILY beta-beta-alpha zinc fingers 125 174 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05513 Seca-Chr3 110894673 110896840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05513 21 446 IDZ Gene Family AT1G03840 50.605 9.49e-132 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g05513 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05513 K25870 - gmx:100778666 674.085