Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05508 ATGACTCAGTGCAGTTACCCTGAAAACAATCACAACATCATTGTTGAGAGGCGTAAGGATAGCTTAATCAGAACTTGTCCTACATGTGGTCATCATGTCAAATGCCAAGAGCAGGCTGCTGGAATTCATGACTTACCTGGACTACCTGCTGGAGTGAAGTTTGATCCTACTGATCAGGAGATTCTTGAACATTTGGAAGCGAAGGTGCGCTCTGACATTCACATGCTTCACCCTTTAATTGATGAGTTCATCCCTACTCTTGAAGGAGAGAATGGAATCTGCTGTACCCATCCAGAGAAGTTGCCAGGAGTTAGCAAAGATGGCCTAATCAGGCATTTCTTTCACCGGCCTTCCAAAGCATACACAACAGGAACAAGGAAAAGGAGAAAGGTGCACACAGATGAAGATGGCAGTGAGACCAGGTGGCACAAAACAGGTAAGACTAGGCCAGTCTACATCAGTGGAAAGTTGAAAGGGTACAAGAAGATTCTTGTGCTTTACACTAACTACAGAAAGCAGAGAAAGCCAGAGAAAACAAATTGGGTCATGCACCAGTACCACCTTGGCAATAATGAAGAGGAGAAGGAAGGGGAGTTGGTAGTCTCCAAAGTTTTCTATCAAACACAACCTAGACAATGTGGTGGTTCACTGATAAAAGACTCATTTCCTGCAAAACTAAATGGTCAAGGGGTGCATGAGGTAGTTAATCATAAAAACAGTGGGTTTGTTGAGTACTACAATACTTCTTTCATATCCTTTGATCAAGGGGAACAACATAGATCTAGCAATGCTCAAGTAATTTCCCATTTTCCTGTCCATGATGGTGCTCCTTTCATGCCATGA 843 0.4306 MTQCSYPENNHNIIVERRKDSLIRTCPTCGHHVKCQEQAAGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHMLHPLIDEFIPTLEGENGICCTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHTDEDGSETRWHKTGKTRPVYISGKLKGYKKILVLYTNYRKQRKPEKTNWVMHQYHLGNNEEEKEGELVVSKVFYQTQPRQCGGSLIKDSFPAKLNGQGVHEVVNHKNSGFVEYYNTSFISFDQGEQHRSSNAQVISHFPVHDGAPFMP. 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05508 280 ProSiteProfiles NAC domain profile. 48 207 IPR003441 GO:0003677|GO:0006355
Seca3g05508 280 Pfam No apical meristem (NAM) protein 49 188 IPR003441 GO:0003677|GO:0006355
Seca3g05508 280 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 20 228 IPR044799 GO:0003700
Seca3g05508 280 MobiDBLite consensus disorder prediction 127 142 - -
Seca3g05508 280 FunFam NAC domain-containing protein 73 57 211 - -
Seca3g05508 280 SUPERFAMILY NAC domain 43 207 IPR036093 GO:0003677|GO:0006355
Seca3g05508 280 Gene3D NAC domain 57 211 IPR036093 GO:0003677|GO:0006355
Seca3g05508 280 MobiDBLite consensus disorder prediction 121 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05508 Seca-Chr3 110742197 110744128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05508 24 217 NAC Transcription Factor Family AT4G28500 82.564 2.46e-117 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca3g05508 NAM 7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05508 - - gmx:100791648 544.658