Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05505 ATGGGTGTTGACTATTACAAGGTCTTGCAGGTCGATAGGAACGCCAAAGAGGACGACCTGAAGAAGGCTTATAGGAAGCTCGCCATGAAATGGCACCCCGACAAGAACCCTAACAACAAAAAAGAAGCCGAATCCAAATTCAAACAAATCTCAGAAGCCTACGATGTGCTGAGTGATCCTCAGAAGAGAGCTATCTATGATCAATATGGGGAAGAGGGTCTGAAGGGTCAGGTGCCACCTCCTGATGCTTCTGCTGGTGGTGGAACCACTTTCTTTTCCACCGGAGGAGACATTCCGGCGTCGTTTCGGTTCAATCCCCGGGACGCCGATGATATTTTTAAGGAGTTTTTTGGGTTCTCGAGCCCCTTTGGGGGAATGGGGAGAGGTGGTGGTGGCGGTGGCGGAGGCATGAGATCGAGGTTCTCTAATGGGATGTTTGGTGATGACATATTTGGATCTTTTGGAGATGGAGGAGGAGGAGTCCATGTGAATCAAGGTGCTCCTCGCAAGGCTCCTCCTATTGAGAACAGGTTGCCCTGCTCTCTCGAGGAGATATATAAAGGGACCACCAAGAAGATGAAGATTTCTAGAGAAATTGTTGATGCCACTGGCAAAACCATGCAGGTGGAGGAGATCTTGACGATTAATGTCAAGCCTGGTTGGAAGAAGGGTACCAAGATCACCTTCCCAGAGAAGGGAAATGAACAGCCGAATGTGACACCTGCCGACCTTGTTTTCATTATTGATGAAAAGCCGCACAGTGTCTTTACTCGGGATGGAAATGATTTGGTGGTTACCCAAAAGATTTCTCTAGCTGAAGCCTTAACTGGTTATACAGTGAATCTCACTACACTGGATGGTAGAAGCTTAAATATACCAATCCACAATGTCATTCATCCTGATTATGAGGAGGTCATTCCAAGAGAAGGAATGCCACTCCCAAAGGATCCAACAAAGAAGGGAAATTTGAGGATAAAGTTCACCATCAAATTCCCAACCCGGCTCACTGCTGACCAGAAGGCAGGAATCAAGAAACTCTTGGTTGCCTGA 1050 0.4724 MGVDYYKVLQVDRNAKEDDLKKAYRKLAMKWHPDKNPNNKKEAESKFKQISEAYDVLSDPQKRAIYDQYGEEGLKGQVPPPDASAGGGTTFFSTGGDIPASFRFNPRDADDIFKEFFGFSSPFGGMGRGGGGGGGGMRSRFSNGMFGDDIFGSFGDGGGGVHVNQGAPRKAPPIENRLPCSLEEIYKGTTKKMKISREIVDATGKTMQVEEILTINVKPGWKKGTKITFPEKGNEQPNVTPADLVFIIDEKPHSVFTRDGNDLVVTQKISLAEALTGYTVNLTTLDGRSLNIPIHNVIHPDYEEVIPREGMPLPKDPTKKGNLRIKFTIKFPTRLTADQKAGIKKLLVA. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05505 349 PRINTS DnaJ domain signature 24 39 IPR001623 -
Seca3g05505 349 PRINTS DnaJ domain signature 6 24 IPR001623 -
Seca3g05505 349 PRINTS DnaJ domain signature 42 62 IPR001623 -
Seca3g05505 349 PRINTS DnaJ domain signature 62 81 IPR001623 -
Seca3g05505 349 Gene3D - 253 333 - -
Seca3g05505 349 SUPERFAMILY HSP40/DnaJ peptide-binding domain 173 253 IPR008971 GO:0006457|GO:0051082
Seca3g05505 349 CDD DnaJ 4 59 IPR001623 -
Seca3g05505 349 FunFam DnaJ subfamily B member 13 3 127 - -
Seca3g05505 349 SUPERFAMILY Chaperone J-domain 3 134 IPR036869 -
Seca3g05505 349 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Seca3g05505 349 SMART dnaj_3 3 62 IPR001623 -
Seca3g05505 349 Pfam DnaJ domain 4 67 IPR001623 -
Seca3g05505 349 Pfam DnaJ C terminal domain 174 332 IPR002939 -
Seca3g05505 349 CDD DnaJ_C 172 335 - -
Seca3g05505 349 Gene3D - 173 251 - -
Seca3g05505 349 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 347 - -
Seca3g05505 349 SUPERFAMILY HSP40/DnaJ peptide-binding domain 255 341 IPR008971 GO:0006457|GO:0051082
Seca3g05505 349 Gene3D DnaJ domain 3 127 IPR036869 -
Seca3g05505 349 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Seca3g05505 349 FunFam Dnaj homolog subfamily b member 170 251 - -
Seca3g05505 349 FunFam DnaJ subfamily B member 13 253 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05505 Seca-Chr3 110654411 110658493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05505 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 1.94e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05505 K09510 - gmx:100778672 545.428