Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05496 ATGCTCGCGGTGTCACCTTTGAGGAGCACGAAAGATGAAGGCCAAGGAGAGATCGAGAACTTCTCGATCGGAACTGATGACTTCGCTGACCTTTCCGATGGGAACTTGTTGGAAAGCATCAACTTCGATGATCTATTTGTCGGAATCGACGACTGTGATGTCTTGCCGGATCTGGAAATGGACCCTGAAATGCTTGCTGAGTTCTCCGTCAGCGGTGGTGAGGAATCGGAGATGAACTCATCAGCTTCATTTGCAAATAGCAAATCTGGGGATGGGAATATTGTTACTACTACGCAAAAACAAGATGAAGATAAAGGTGCTTCTTCAGATTCGGGTACTAATTCTGGGTCAAGTCGTGGCGAGGAGATAGTGAGCAAAAGAGACGAATCTGTTGTGGTGGTTAATCCATCACCTAAGGAAGGCGAGAAAGGAAGAAAATCTTCATCTCAATCAAAGAATCCTCAAGGGAAGAGAAAGGTGAAATTCTTGGGTTGTGTGAAGGTGGATTGGACCCCAGAATTGCACAGACGGTTTGTGCAAGCAGTAGAGCAGCTTGGAGTGGATAAGGCTGTGCCTTCACGGATTCTGGAGATTATGGGAATTGACTGCCTCACCCGCCATAACATTGCCAGCCACCTTCAAAAATATCGATCGCATAGGAAGCATTTGTTAGCGCGTGAAGCTGAAGCAGCAAGCTGGAGTCAACGGAGGCAATTGTTTGGTCCAGGAGGAGGAGGGAAGAGAGACATTAACCCTTGGCTTGCACCAACCATGGGTTTCCCTCCCATGACACCAATGCACCATTTTAGACCCTTACATGTATGGGGGCATCAAACTATGGACCGGTCCTTTATGCACATGTGGCCTAAGCATCTACCTTATTCGCCTTCGCCACCAGTATGGCCACCGCGGACAGCTCCACCTCAAGATCCTTCATATTGGCACCACCAACGGGCTCCAAACGTACCAACCCCAGGAACACCGTGTTTTCCACAGCCTCTGACAACAACGAGATTTGGCTCACCAACTGTACCGGGCATTCCACCACCTCACGCCATATATCAAGTAGATCCAGGCATTGGTCTTCCCGCCGGCCAAACAGCTCCTCCACCCCTCTTCGATTTTCATCCGTCAAAGGAGAGCATAGACGCAGCTATTAGTGATGTTTTATCAAAGCCATGGTTGCCACTTCCTCTTGGCCTTAAAGCTCCAGCGCTTGATGGTGTGATGGGTGAATTACAGAGACAAGGAGTTCCAAAAGTTCCACTCTCTTGTGCTTGA 1281 0.4879 MLAVSPLRSTKDEGQGEIENFSIGTDDFADLSDGNLLESINFDDLFVGIDDCDVLPDLEMDPEMLAEFSVSGGEESEMNSSASFANSKSGDGNIVTTTQKQDEDKGASSDSGTNSGSSRGEEIVSKRDESVVVVNPSPKEGEKGRKSSSQSKNPQGKRKVKFLGCVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRQLFGPGGGGKRDINPWLAPTMGFPPMTPMHHFRPLHVWGHQTMDRSFMHMWPKHLPYSPSPPVWPPRTAPPQDPSYWHHQRAPNVPTPGTPCFPQPLTTTRFGSPTVPGIPPPHAIYQVDPGIGLPAGQTAPPPLFDFHPSKESIDAAISDVLSKPWLPLPLGLKAPALDGVMGELQRQGVPKVPLSCA. 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05496 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 165 221 IPR017930 -
Seca3g05496 426 FunFam Two-component response regulator 164 224 - -
Seca3g05496 426 Pfam Myb-like DNA-binding domain 168 217 IPR001005 -
Seca3g05496 426 MobiDBLite consensus disorder prediction 73 120 - -
Seca3g05496 426 MobiDBLite consensus disorder prediction 69 158 - -
Seca3g05496 426 SUPERFAMILY Homeodomain-like 168 222 IPR009057 -
Seca3g05496 426 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 425 IPR044825 GO:0003700|GO:0045893
Seca3g05496 426 Gene3D - 166 223 - -
Seca3g05496 426 NCBIfam myb-like DNA-binding domain, SHAQKYF class 167 219 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05496 Seca-Chr3 110490710 110494905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05496 30 332 G2-like Transcription Factor Family AT5G44190 45.625 2.33e-63 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca3g05496 Myb_DNA-binding 5.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05496 - - gmx:100790591 641.728