Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05489 ATGGCTTCGTTATTCAAGGATCCAACGAAGCTTTCGGCGTATCGAGATAGAAGATTCCCTGGAACGCAAGAGGACTTTGAGCAGGCGCTGCAGACTTCAACCACCGTTTATGTGGGGAACATGTCGTTTTACACAACAGAGGAGCAAGTTTATGAACTTTTTTCCCGAGCTGGAGAAATCAAGAAGATCATCATGGGCTTGGATAAGAACACTAAAACTCCCTGCGGATTTTGTTTCATTTTATATTATTCACGCGAAGATACTGAGGATGCTTGCAAATACATAAGTGGGACAATACTGGATGATCGCCCTATTCGTGTTGATTTTGACTGGGGATTCCAGGATGGCAGACAATGGGGTCGCGGTCGTAGTGGTGGCCAGGTACGTGACGAATATCGCACTGATTATGATCCTGGTAGAGGTGGTTACGGGAAGTTGGTTCAGAAGGAGTTAGAAGTACAAAGGCAGCTTGTAGATTATGGTGCTGGTTCTTTGGGATCTTTTCCACCAGTTATTCCTTCCTATGGTAGACACGGTGGAAGCCATGGTCACGGTGGTTCCCATCGGCATGGTAGAGGTAGTTTCATCTCTAGACAGTCTCTTTTGTCCAGCAATGTTGATTTTCTTAGAAGCTCTTGGAAGGGTTACTGTTACTTATTTACATTTGAATTTACCATTGATATGAATTTAATTTCTCTTTGA 702 0.4373 MASLFKDPTKLSAYRDRRFPGTQEDFEQALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFILYYSREDTEDACKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEVQRQLVDYGAGSLGSFPPVIPSYGRHGGSHGHGGSHRHGRGSFISRQSLLSSNVDFLRSSWKGYCYLFTFEFTIDMNLISL. 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05489 233 SUPERFAMILY RNA-binding domain, RBD 22 144 IPR035979 GO:0003676
Seca3g05489 233 CDD RRM_NCBP2 36 113 IPR034148 -
Seca3g05489 233 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 2 154 IPR027157 GO:0000339|GO:0005846|GO:0045292
Seca3g05489 233 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Seca3g05489 233 SMART rrm1_1 35 108 IPR000504 GO:0003723
Seca3g05489 233 FunFam Nuclear cap-binding protein subunit 2 4 150 - -
Seca3g05489 233 Gene3D - 6 150 IPR012677 -
Seca3g05489 233 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05489 Seca-Chr3 110069250 110075432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05489 31 122 Eukaryotic Initiation Factors Gene Family AT1G49760 27.174 4.02e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05489 K12883 - gmx:100776217 340.887