LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g05486	ATGTCATTGGGGCCGCACCACCTTCAACCACCGCAAATAGCACCTCTGCCGCTACTACCACCTCAGCAGCAACAGCTGCAGTTGTTGCCACAACCGCAATCCGAGAATGACCCACTGAAGGCGGTGACTAACGACGTCTCTAGCATGGAGACCGATAAGGACATGTCAGCTAGTGTCTCAAAGGGTAATGATGCAATCACTGGTCACATAACATCAACCACAATCAGAGGGGAAAACGGTGAACCTAAACAGACCATCAGTTACATGGCTGAACGTGTTGTTGGCACTGGATCATTTGGAATTGTTTTCCAGGCAAAGTTCTTGGAGACTGGGGAGGCAGTTTCTATAAAGAAGGTCTTGAAGGACAAGCGGTACAAAAATCGTGAATTGAAGTTAATGCGCGTGATGGATCATCCAAATGTAATTTCCCTGAAGCATTGTTTCTTCTCTACAACAAGCAAAGATGATCTTTTTTTGAACTTAGTCATGGAATATGTCCATGAGACAATGTACCAAGTTCTAAAGCACTACAATAGAATCAACCAAAGAATGCCCCCAATCTATGTGAAATTATATGCATATCAAATCTTTAGGGCACTAGCATATATCCATACTGTACCTAGAGTTTGCTATAGGGATGTGAAGCCTCAAAATATTTTGGTTGATCCTCTCAATCACCAAGTTAAGCTTTGTGATTTTGGGAGCGCAAAAGTTTTGGTCAAGGGTGAATCAAACATTTCGTACATAAGTTCGCGATACTATAGGGCCCCAGAACTAATATTTGGAGCGACAAAATATACAACATCTATTGATATCTGGCCAGCTGGTTATGTCCTTGCGGAACTTCTTCTAGGCAAGCCACTGTTCCGGGGAGAAAATCAGGTGGACCAACTTGTAGAGATTATTAAGGTTCTTGGTACTCCAACTCGAGAAGAAATTCGTTGCATGAAACCTAATTATACAGTTTTTAGATTCCCGCATATAAAAGCTCATCCTTGGCATAAGGTTTTTCACAAGCGAATGCCTCTTGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCACCAAGTCTTCGTTATCGTGCACTGGAAGCATGTGCACATCCTTTCTTTGATGAACTTTGTGAGCCCAATGCCCGGCTACCTAATGGTTGTCCGCTGCCTCCCCTTTTCAACTTTAAACAAGAATTAGCTGTAGCACCCCGTGAAGTGGTCCACAAACTCATCCCAGACCATGTCAAGCATCAAAATGGTCTTGGCTTCCCATATCCGGCTAGTACATAA	1287	0.432	MSLGPHHLQPPQIAPLPLLPPQQQQLQLLPQPQSENDPLKAVTNDVSSMETDKDMSASVSKGNDAITGHITSTTIRGENGEPKQTISYMAERVVGTGSFGIVFQAKFLETGEAVSIKKVLKDKRYKNRELKLMRVMDHPNVISLKHCFFSTTSKDDLFLNLVMEYVHETMYQVLKHYNRINQRMPPIYVKLYAYQIFRALAYIHTVPRVCYRDVKPQNILVDPLNHQVKLCDFGSAKVLVKGESNISYISSRYYRAPELIFGATKYTTSIDIWPAGYVLAELLLGKPLFRGENQVDQLVEIIKVLGTPTREEIRCMKPNYTVFRFPHIKAHPWHKVFHKRMPLEAIDLASRLLQYSPSLRYRALEACAHPFFDELCEPNARLPNGCPLPPLFNFKQELAVAPREVVHKLIPDHVKHQNGLGFPYPAST.	429

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g05486	428	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	209	221	IPR008271	GO:0004672\|GO:0006468
	Seca3g05486	428	CDD	STKc_GSK3	83	375	IPR039192	-
	Seca3g05486	428	Pfam	Protein kinase domain	88	372	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca3g05486	428	Gene3D	Phosphorylase Kinase; domain 1	73	167	-	-
	Seca3g05486	428	ProSiteProfiles	Protein kinase domain profile.	88	372	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca3g05486	428	SUPERFAMILY	Protein kinase-like (PK-like)	87	400	IPR011009	-
	Seca3g05486	428	FunFam	Shaggy-related protein kinase kappa	168	415	-	-
	Seca3g05486	428	ProSitePatterns	Protein kinases ATP-binding region signature.	94	118	IPR017441	GO:0005524
	Seca3g05486	428	Gene3D	Transferase(Phosphotransferase) domain 1	168	415	-	-
	Seca3g05486	428	SMART	serkin_6	88	372	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca3g05486	428	FunFam	Glycogen synthase kinase-3 beta	72	167	-	-
	Seca3g05486	428	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	52	417	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g05486	Seca-Chr3	109972069	109976088	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g05486	88	427	MAP Kinase Gene Family	AT1G73670	33.425	2.38e-51	180

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Seca3g05486		Pkinase	1.2e-58	CL0016