Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05483 ATGAAGCGTTATGTTCACATCAATGATGATGAATCATCCCATGATTTCTACTGTGATAATCGTATATCAAACAGAAAATATACTGTATTGAACTTTCTTCCAAAAAATTTATGGGAACAGTTCAGCCGGTTCATGAATCAGTACTTTTTGCTGATAGCTTGCCTACAGTTATGGCCTCTCATTACTCCAGTAAATCCTGCCAGTACATGGGGTCCACTTATCTTTATTTTTGCCGTCTCTGCATCCAAAGAGGCATGGGATGATTACAATAGATATCTCTCAGACAAAAAGGCAAATGAGAAGGAAGTATGGGTTGTCAGGAAGGGCATCAAGAAACTTATCCAAGCCCAGGATATTCATGTAGGTAATATAGTATGGCTACGTGAAAATGACGAAGTGCCTTGTGACCTTGTATTGATTGGCACCTCTGATCCTCAAGGAGTTTGCTATATAGAGACTTCTGCGCTTGATGGTGAAACTGATCTGAAGACACGGGCCATACCTTCTGCTTACATGGGAATTGACGTTGAACTATTGCACAAAATTAAGGGCGTTATTGAGTGTCCCAGTCCAGATAAAGACATCAGAAGATTTGATGCAAACATGAGGTTGTACCCCCCGTTTATTGACAATGATGTTTGCCCTTTAACCATTAAAAACACAATTCTGCAGTCATGTTACTTGAGAAACACTGAATGGGCATGTGGAGTGGCTGTGTATACAGGCAACGAAACCAAACTGGGCATGAGTAGAGGTATCCCCGAACCAAAACTCACTGCTATGGATGCCATGATTGACAAGTTGACTGGTGCTATATTTATATTCCAAATTGTGGTTGTTATGGTTCTTGGCATAGCGGGTAATGTTTGGAAGGATACAGAAGCAAAGAAACTATGGTATGTTCTTTACCCTCATGAAGGCCCTTGGTATGAACTATTGGTAATCCCTTTGCGGTTCGAGCTTCTTTGTTCCATCATGATACCCATATCAATTAAGGTATCTCTGGATTTGGTGAAGAGCTTGTACGCAAAGTTTATTGACTGGGACCATCAGATGATTGACCTAGAGACTAGTACTCCATCCCATGCAACAAATACAGCGATAAGTGAGGACTTGGGACAAGTTGAGTACATTTTGACTGACAAAACTGGCACCCTGACTGAGAATAAGATGATATTTAGAAGATGTTGTATTAGTGGCATTTTCTATGGAAATGAGAATGGAGATGCATTGAAAGATGTAGAGCTTCTCAATGCTGTTTCCAGTGGTTCTTCAGATGTTGTAAAATTTCTTACAGTTATGGCGATATGTAATACTGTTGTACCTACACGAAGCAAAACTGGAGATATCTTGTATAAGGCACAGTCTCAGGATGAAGATGCTCTCGTTCATGCTGCTGCTCGGCTGCATATGGTTTTATTCAATAAGAGTGGAAACATTCTCGAAGTCAACTTCAACTCTTCAATACTTCAGTATGAAGTCCTGGAAACCTTAGAGTTCACCTCTGATCGGAAAAGAATGTCAGTAGTGTTGAAAGATTGCCAAAATGGAAAAATTCTTCTCCTGTCAAAAGGAGCAGATGAAGCTATTCTTCCATATGCCCGTGCTGGGCAGCAAACTCGGCATTTTATTGAAGCTGTGGAGCAATATGCTCACTTGGGATTACGTACGCTCTGTTTGGCTTGGCGTGAGTTAAAGAAAGATGAATATCGAGAATGGTCATTGATGTTTAAAGAGGCCAGTAGCACTTTGGTTGATAGGGAGTGGAGAGTAGCTGAGGTCTGCCAAAGAGTAGAACATGACTTGGAAATTCTTGGTGTAACAGCAATAGAGGATCGTTTACAGGATGGAGTTCCTGAAACAATAGAAACACTAAGAAAAGCTGGAATAAATTTTTGGATGCTAACAGGAGACAAGCAGGATACTGCAATACAAATTGCCTTGTCATGTAATTTTATTTCCCCAGAACCGAAGGGACAGCTTCTATTAATTGATGGAAAAACAGAGGATGAAGTTTGTAGAAGTTTAGAGAGAGTGCTTCAAACAATGCGGATAACAACCTCAGAACCCAAGGATGTGGCTTTTGTTGTTGATGGCTGGGCTCTTGAGATTGCACTTAGCCACTACCGTAAAGCTTTCACTGAGCTGGCAGTATTGTCAAGGACTGCTATATGTTGTCGTGTGACACCATCACAAAAAGCACAGCTTGTACAAATCCTAAAATCATGTGACTATAGAACACTGGCGATTGGCGATGGTGGGAATGATGTAAGGATGATACAACAAGCTGATATTGGTGTGGGCATCAGTGGCAGAGAAGGAATGCAGGCAGCAAGAGCAGCTGATTACAGTATTGGAAGTAAGCCGTTTTATATCTTTCTTAGGTGCAATCATGTGTATACTAGTTCATGA 2412 0.4092 MKRYVHINDDESSHDFYCDNRISNRKYTVLNFLPKNLWEQFSRFMNQYFLLIACLQLWPLITPVNPASTWGPLIFIFAVSASKEAWDDYNRYLSDKKANEKEVWVVRKGIKKLIQAQDIHVGNIVWLRENDEVPCDLVLIGTSDPQGVCYIETSALDGETDLKTRAIPSAYMGIDVELLHKIKGVIECPSPDKDIRRFDANMRLYPPFIDNDVCPLTIKNTILQSCYLRNTEWACGVAVYTGNETKLGMSRGIPEPKLTAMDAMIDKLTGAIFIFQIVVVMVLGIAGNVWKDTEAKKLWYVLYPHEGPWYELLVIPLRFELLCSIMIPISIKVSLDLVKSLYAKFIDWDHQMIDLETSTPSHATNTAISEDLGQVEYILTDKTGTLTENKMIFRRCCISGIFYGNENGDALKDVELLNAVSSGSSDVVKFLTVMAICNTVVPTRSKTGDILYKAQSQDEDALVHAAARLHMVLFNKSGNILEVNFNSSILQYEVLETLEFTSDRKRMSVVLKDCQNGKILLLSKGADEAILPYARAGQQTRHFIEAVEQYAHLGLRTLCLAWRELKKDEYREWSLMFKEASSTLVDREWRVAEVCQRVEHDLEILGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQDTAIQIALSCNFISPEPKGQLLLIDGKTEDEVCRSLERVLQTMRITTSEPKDVAFVVDGWALEIALSHYRKAFTELAVLSRTAICCRVTPSQKAQLVQILKSCDYRTLAIGDGGNDVRMIQQADIGVGISGREGMQAARAADYSIGSKPFYIFLRCNHVYTSS. 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05483 803 SFLD p-type atpase 362 792 IPR044492 -
Seca3g05483 803 SUPERFAMILY Calcium ATPase, transduction domain A 100 248 IPR008250 -
Seca3g05483 803 Gene3D - 444 592 IPR023299 GO:0000166
Seca3g05483 803 FunFam Phospholipid-transporting ATPase 602 788 - -
Seca3g05483 803 FunFam Phospholipid-transporting ATPase 449 592 - -
Seca3g05483 803 SFLD C1.7: P-type atpase like 362 792 - -
Seca3g05483 803 Gene3D - 602 790 IPR023214 -
Seca3g05483 803 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 350 IPR023298 -
Seca3g05483 803 FunFam Phospholipid-transporting ATPase 75 251 - -
Seca3g05483 803 SUPERFAMILY HAD-like 368 787 IPR036412 -
Seca3g05483 803 Pfam Cation transport ATPase (P-type) 436 532 - -
Seca3g05483 803 PRINTS P-type cation-transporting ATPase superfamily signature 750 769 - -
Seca3g05483 803 PRINTS P-type cation-transporting ATPase superfamily signature 152 166 - -
Seca3g05483 803 PRINTS P-type cation-transporting ATPase superfamily signature 379 393 - -
Seca3g05483 803 PRINTS P-type cation-transporting ATPase superfamily signature 628 638 - -
Seca3g05483 803 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 5 787 - -
Seca3g05483 803 Pfam E1-E2 ATPase 99 292 - -
Seca3g05483 803 NCBIfam HAD-IC family P-type ATPase 717 785 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g05483 803 Pfam Phospholipid-translocating ATPase N-terminal 5 70 IPR032631 -
Seca3g05483 803 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 386 573 IPR023299 GO:0000166
Seca3g05483 803 ProSitePatterns E1-E2 ATPases phosphorylation site. 381 387 IPR018303 -
Seca3g05483 803 Gene3D - 75 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05483 Seca-Chr3 109916265 109928999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05483 1 790 Primary Pumps ATPases AT5G44240 85.570 0.0 1429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05483 K01530 - gmx:100786505 1528.46