Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05481 ATGAGCAGTGTCTGTGCTGAGCAACACAAGTTTCACTCTTCCCACCAACTCCTCTCCCCAAAGAAATCCCTCAGAGAAATCGACATCCCACCAAGGAAACTCCTCACTCGCCGCGCCGCCGCACACGACGTCGCCGCTGAAATGTATTCCGACGAGGCAATCCTTCAGAAATATCTCCCTTATAACAACCCTGCCAATTCGGACTCTGATTCCGATGACCCTTACTCCTCTGACCATTTCCGCATGTATGAATTCAAGGTCCGCCGGTGCACTCGCAGCCGGAGCCATGACTGGACCGACTGTCCCTTCGCACACCCTGGTGAGAAAGCTCGCCGCCGTGATCCACGGCGGTATCATTACTCAGGCACGGTGTGTCCTGAGTATCGCCGTGGAGGGTGCAGCCGTGGTGACAGCTGTGAATTCGCACATGGCGTGTTTGAATGCTGGCTTCACCCTGCGAGGTACAGAACCGAAGCTTGTAAAGATGGGAAGAATTGCAAGCGAAAGGTGTGTTTCTTTGCACACACACCTCGCCAGCTGAGAATCTTGCCAGTGAGTTCTCAAAATTCTTCAAATGAAATGACATGCAATAAGAAAACCAATAAGCTTTTAAGCCCTGTTTCTAGATCAAACAACTGTTGTTTGTTTTGCCATAACTGTGGCGGTGGTGGTAGTGGCGGTGGAAATTCCAATGCTTCACCAACTTCCACACTTTTCGGCATGTCGCATTTCTCGCCGCCGATGTCGCCGTCGTCATCTCAAACCTCGCCGCCTCTGTCTCCGCTGAACCCGCGAAATGCGGTCTCTTCCATTTCTCGCTATGGTGCCATGAATAATCATAATCATCATGGGGTTGTGAGCTATAAGGATGTTCTTACTGAGTTAATGAGTTCTTTTGAGGGGTTGAGTTTCGGTGATGGTTCGCCTGTTTCTGGTGCAAAAAGCACTTTTAGCAGCAGAAATCTGCCATGGCTTGATGTTCCTCTGAACTGTGATGAACAGCAACAACAGTTCATTGTTTCGCCTTCGGCTTCTTCTTTCAGCTGTGATGAACAACAGCAACAGTTCATTCTTTCACCTTCGACTACTACTCAGACACCACCAAGCTTCAAGGGGAAATATTCAATTGGAAGCAGCAAATTCTTCGGTAACGACAATAAATTTGTCAGTGCTGACGCTAATGGGACTTCTTGCCCTGCCCCTGATCTCGGGTGGGTGAATGAGCTGCTGATGTAG 1236 0.4943 MSSVCAEQHKFHSSHQLLSPKKSLREIDIPPRKLLTRRAAAHDVAAEMYSDEAILQKYLPYNNPANSDSDSDDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPEYRRGGCSRGDSCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVSSQNSSNEMTCNKKTNKLLSPVSRSNNCCLFCHNCGGGGSGGGNSNASPTSTLFGMSHFSPPMSPSSSQTSPPLSPLNPRNAVSSISRYGAMNNHNHHGVVSYKDVLTELMSSFEGLSFGDGSPVSGAKSTFSSRNLPWLDVPLNCDEQQQQFIVSPSASSFSCDEQQQQFILSPSTTTQTPPSFKGKYSIGSSKFFGNDNKFVSADANGTSCPAPDLGWVNELLM. 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05481 411 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 124 144 IPR000571 GO:0046872
Seca3g05481 411 PANTHER UNKEMPT FAMILY MEMBER 42 410 IPR045234 -
Seca3g05481 411 FunFam Zinc finger CCCH domain-containing protein 66 77 145 - -
Seca3g05481 411 SMART c3hfinal6 154 177 IPR000571 GO:0046872
Seca3g05481 411 SMART c3hfinal6 119 145 IPR000571 GO:0046872
Seca3g05481 411 ProSiteProfiles Zinc finger C3H1-type profile. 120 146 IPR000571 GO:0046872
Seca3g05481 411 MobiDBLite consensus disorder prediction 237 263 - -
Seca3g05481 411 Gene3D - 119 183 - -
Seca3g05481 411 SUPERFAMILY CCCH zinc finger 118 148 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05481 Seca-Chr3 109898567 109899802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05481 40 181 C2H2 Transcription Factor Family AT5G07500 57.237 1.28e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca3g05481 zf-CCCH 1.2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05481 K23047 - gmx:100801371 521.161