Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05479 ATGCCAGCCCAGAAGCGTTCCCTTGCTGAGACAATGGAGGATGGGGACACTTCGCAGCAGCACCTCTTCCACCCGCGACATGCCAAGCAACCACCGCACTTCAAAGCCCACGACGACCAACCACAACAACAAGAGCAGCAGCAGCAGGAACTAGAGGAGGATGATGATGACGAACAGCAGGAGGAGGAGGAAGAGGAAGAGGAAGAGGAGGAGGAGGAAGAGCCAGGGGAAGAAGAGGAAGAAGAACAAGAAGAAGATGACGAAGAAGAAGAAGGGCATCGCCATAATCACGACAAGGATAAATCACAGGATTCCGACGAAACCCCATCTTCTGGCTCTGAAGAAAAACCCGAATTTGTGTTTGTAGAACTTCTGGATATACGCAAAGATGTCCAATGTCCAATTTGCCTTGGTATTATTAAGAAAACAAGAACTGTTATGGAATGCTTGCACCGGTTTTGTAGGGAATGCATTGACAAATCAATGCGACTAGGGAACAATGAATGCCCTGCTTGCCGCACACATTGTGCCAGTCGTCGCTCTTTGAGAGATGATCCAAACTATGATGCCCTTATAGCTTCTTTATATCCAGATATAGAGAAGTACGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGCAATAAGCAGATCTTTGATGTTGTGCTCAATGCCTACTTGGATGAACACTTGGATAGCAAGGTTGCCAGTAGAAGATTGCACATGACACTTGTAGGAACATTGGTTTTGTTTAAGATGATGTGGTTCTTGATAGTGATACTGACAACTGAAAGGTCTTTGTCAACATTGAGCAGTAGAACCCTAATATTGCTCAAGCATGGTATCAATCTTGTGATCCTTGAGAAGTACCTTGATGAGAAAACTGTTTTCCACCTACACCCTTTTGGCTGTTTTGTCATTGGCGCTTATGGTGGATGGGGTGCCTATGGTGGGGGTGCTTTCTCAGTAAAAGACTCAACCAAGGTTAACAGGAGTGGAGCTTACGTTGTCAAGGAGGCTGCTAAGGGCGTAGTTGCCAATGGACTTACCAAGAGGTGCATTGGCCAAGTCTCCTATGCTTTTGGCGTGCTTGATTGTTTGCCTATCTTTGTCGACACAAATTCAAGTGTGAAGAAGCAGTCTAGTCCTCCACTATCCCAATCCCAGAAGCAGCTTGGCCCTGTGGCAGCTGGAGAAATTCAAGCTTCAATAGCAAAAGTAGTTCAACGACAATCTGAAGCACTGGTTAAGAGACGTAAAGATACACCAAGTGCATTTGTGACAAGATCACAGCGTAATCAACGGAACATTCATTCTAGGAGACAAAACCAAGTGATTGATATTCAAGGATCTGAAGATAATGAGGAGGAAAATGACAACAATGAAAAAGACTCTTCTTCCGGTGATGAGCGGTGTACAGAACTCCGGCAGAGAAGGCGAAAGAGATGGACCAGAGTTCGCCCCTCTCAGCCCTCGTCATCAATGGCAAGTCCTGATGGTGGATACATAGAAAGTGATATGGATATAAGTAGAGAAAATCGAGGAATTTCAAGCCAGGTGTCAAAACCTAGAAAGCTTACATGGGGAAGGGGTGGTTTTAGGAGTAACACACGACATGGAAGTGGTGGTGGTAGCAATAGCAAAAGTTCCCGCAGCAATCGATTGTCTAAGTTGGTTGATCATCTTAAAAGCTTGGATGAAAACATTGATGAGTTAAATGTCCATCTAATGCTTGTTTCTATGGACAAAGAAAGTACACCAAGCTTACAGCAGCCACACCTTTGCTGTCGACCAACCTTGACTGTGAACCACCTTTATGAAGTGAGATCCCCTTTGTCTTTTGATCAGTTGTTTCTGGTAGTGATAGTTTTTGATCAACTTGATTTAAATTTGTTTATGCCTCCACCAGAAGGCCTATATGTTGCTCGTCAGACACCTTTGCCAGTTGAAGGAGTTGAGATACTGGCAGTTAAAGGATGCTGCAGTACAAAGTGCGACAAATCAACTGATGAGAATTCAACCCTGGTACATGATGAGCTAACAACGCTGGTTATAGATCCATGCAAAGATGAACTGGAAACTTTGCAAGATCCTGGCATACAGGCGGAAGGAGGCATTATAGTCTTGGTTTGA 2139 0.446 MPAQKRSLAETMEDGDTSQQHLFHPRHAKQPPHFKAHDDQPQQQEQQQQELEEDDDDEQQEEEEEEEEEEEEEEPGEEEEEEQEEDDEEEEGHRHNHDKDKSQDSDETPSSGSEEKPEFVFVELLDIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIASLYPDIEKYEEEELEFREEEKNRNKQIFDVVLNAYLDEHLDSKVASRRLHMTLVGTLVLFKMMWFLIVILTTERSLSTLSSRTLILLKHGINLVILEKYLDEKTVFHLHPFGCFVIGAYGGWGAYGGGAFSVKDSTKVNRSGAYVVKEAAKGVVANGLTKRCIGQVSYAFGVLDCLPIFVDTNSSVKKQSSPPLSQSQKQLGPVAAGEIQASIAKVVQRQSEALVKRRKDTPSAFVTRSQRNQRNIHSRRQNQVIDIQGSEDNEEENDNNEKDSSSGDERCTELRQRRRKRWTRVRPSQPSSSMASPDGGYIESDMDISRENRGISSQVSKPRKLTWGRGGFRSNTRHGSGGGSNSKSSRSNRLSKLVDHLKSLDENIDELNVHLMLVSMDKESTPSLQQPHLCCRPTLTVNHLYEVRSPLSFDQLFLVVIVFDQLDLNLFMPPPEGLYVARQTPLPVEGVEILAVKGCCSTKCDKSTDENSTLVHDELTTLVIDPCKDELETLQDPGIQAEGGIIVLV. 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05479 712 CDD RING-HC_RING1-like 130 195 - -
Seca3g05479 712 Pfam Zinc finger, C3HC4 type (RING finger) 132 172 - -
Seca3g05479 712 MobiDBLite consensus disorder prediction 9 23 - -
Seca3g05479 712 SUPERFAMILY S-adenosylmethionine synthetase 308 382 IPR022636 GO:0004478|GO:0006556
Seca3g05479 712 ProSitePatterns S-adenosylmethionine synthase signature 2. 319 327 IPR022631 GO:0004478|GO:0006556
Seca3g05479 712 MobiDBLite consensus disorder prediction 1 116 - -
Seca3g05479 712 SMART ring_2 133 172 IPR001841 -
Seca3g05479 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 196 IPR013083 -
Seca3g05479 712 SUPERFAMILY RING/U-box 119 188 - -
Seca3g05479 712 MobiDBLite consensus disorder prediction 90 116 - -
Seca3g05479 712 ProSitePatterns Zinc finger RING-type signature. 149 158 IPR017907 -
Seca3g05479 712 Coils Coil 557 577 - -
Seca3g05479 712 Coils Coil 199 219 - -
Seca3g05479 712 PANTHER OS11G0578200 PROTEIN 44 221 IPR044592 -
Seca3g05479 712 MobiDBLite consensus disorder prediction 428 451 - -
Seca3g05479 712 Gene3D - 316 411 - -
Seca3g05479 712 MobiDBLite consensus disorder prediction 540 555 - -
Seca3g05479 712 ProSiteProfiles Zinc finger RING-type profile. 133 173 IPR001841 -
Seca3g05479 712 Pfam S-adenosylmethionine synthetase, C-terminal domain 308 382 IPR022630 GO:0004478|GO:0006556
Seca3g05479 712 MobiDBLite consensus disorder prediction 417 556 - -
Seca3g05479 712 Coils Coil 44 80 - -
Seca3g05479 712 MobiDBLite consensus disorder prediction 48 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05479 Seca-Chr3 109777932 109788089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05479 126 196 C3H Transcription Factor Family AT3G23060 33.784 1.80e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05479 K10695 - gmx:100776547 380.563