LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g05477	ATGGACGGGATGGAGCCAAAGGTGATGATGAGGAGTGACAACAAGGTGAAGAAGGAGGGTGTTGACAACCAAAATGGGCACTCGGAGGAGGATAAGAAGAAGAAAGGGGTGATGGCTTTTGCTGGGAAGAAAGGTTCTGGTGGTGGCATGCGGTGTTGTCAAGCAGAGAAGTGCAACGCTGATCTTCATGATGCCAAACAGTACCATAGGAGGCATAAGGTGTGTGAGTATCATGCCAAGGCTCAGGTGGTTCTTGTGGCTGGAACAAGACAACGGTTTTGTCAGCAATGTAGCAGGTTTGGGGAGAGATTCCATGAGTTAGCTGAATTTGATGACGCAAAAAGGAGTTGCCGAAGGCGTTTGGCTGGACACAATGAACGGCGAAGAAAGAGCTCTGAGTCTCAAGCAGAAGGATCAAACCGCAAAGGGACAGGGCCTCAGTTGAAGGACATTGCTTGTGGACAAGCCGATGATAGGGGGAGAATTCAGATAACAATTCAAGAAAATGGAGCTAATTACAAACATTTTCAGATAAGATGA	540	0.4741	MDGMEPKVMMRSDNKVKKEGVDNQNGHSEEDKKKKGVMAFAGKKGSGGGMRCCQAEKCNADLHDAKQYHRRHKVCEYHAKAQVVLVAGTRQRFCQQCSRFGERFHELAEFDDAKRSCRRRLAGHNERRRKSSESQAEGSNRKGTGPQLKDIACGQADDRGRIQITIQENGANYKHFQIR.	180

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g05477	179	MobiDBLite	consensus disorder prediction	1	37	-	-
	Seca3g05477	179	PANTHER	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	32	135	IPR044817	GO:0003677
	Seca3g05477	179	SUPERFAMILY	SBT domain	51	134	IPR036893	GO:0003677\|GO:0005634
	Seca3g05477	179	MobiDBLite	consensus disorder prediction	121	152	-	-
	Seca3g05477	179	Gene3D	-	44	118	IPR036893	GO:0003677\|GO:0005634
	Seca3g05477	179	ProSiteProfiles	Zinc finger SBP-type profile.	50	131	IPR004333	GO:0003677
	Seca3g05477	179	Pfam	SBP domain	53	130	IPR004333	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g05477	Seca-Chr3	109746865	109748965	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g05477	32	179	SBP-box Gene Family	AT3G15270	51.678	6.68e-42	137

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	SBP	Seca3g05477		SBP	5.3e-29	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g05477	-		-	ccaj:109810441	251.906