Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05474 ATGGCGGATGGATCACATCCGCAGCATCCGTCGGTAGTGCAGAAGTTATCTGGACAGTCCTATCTTGTGTCCAGGCTCACTCCTAATCAATATAGAAACAATTCTACAACTGGTACTTACTTCAATGGAGGTGTGCAGTCTTCGGTTTTGGTTCCGGTTACTGTGTCTGCTCCGGCAGAGAAAGGTGCATCTGGATTTTTGGTGGATTTTCTCATGGGAGGAGTGTCGGCTGCCGTGTCTAAGACAGCTGCTGCTCCAATAGAACGAGTTAAGTTGCTCATTCAAAACCAGGATGAAATGATTAAAAGTGGTCGGTTATCTGAGCCATACAAGGGAATTGGTGATTGTTTTGGTCGAACCATTAAGGATGAAGGGGTGATCTCTCTTTGGAGAGGAAATACCGCTAATGTTATCAGATACTTCCCTACTCAGGTGGCTCTGAACTTTGCTTTTAAGGATTACTTCAAGAGGCTTTTCAACTTCAAAAAAGATAAAGATGGCTACTGGAAGTGGTTTGCTGGGAATTTGGCATCTGGTGGGGCTGCTGGTGCTTCTTCCCTCTTGTTTGTCTATTCTTTGGACTATGCCCGTACACGGTTAGCTAATGATGCAAAGGCTGCAAAGAAGGGTGGTGAAAGGCAGTTCAATGGCCTGATTGATGTTTACAAGAAAACACTTAAGTCTGATGGTATTGCTGGCCTTTATCGTGGATTCAACATCTCATGTGTCGGAATTATAGTGTATCGTGGTCTTTACTTTGGAATGTATGATTCTCTGAAACCAGTGGTTTTGGTTGGTGGAATGCAGGATAGTTTCTTTGCAAGTTTCTTTTTGGGATGGGGGATTACAATAGGTGCTGGCTTGGCCTCTTACCCAATTGATACTGTCCGAAGGAGGATGATGATGACATCCGGAGAAGCTGTAAAATACAATAGCTCTTTGGATGCATTCAAGACAATCATCGCAAAAGAGGGTACTAAGTCACTCTTCAAAGGTGCTGGTGCAAACATATTACGTGCTGTTGCAGGTGCCGGGGTGCTTGCTGGTTATGATAAGCTACAGCTCATCATGTTCGGAAAGAAGTATGGTTCTGGTGGAGGTTAA 1104 0.4429 MADGSHPQHPSVVQKLSGQSYLVSRLTPNQYRNNSTTGTYFNGGVQSSVLVPVTVSAPAEKGASGFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFGRTIKDEGVISLWRGNTANVIRYFPTQVALNFAFKDYFKRLFNFKKDKDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLVGGMQDSFFASFFLGWGITIGAGLASYPIDTVRRRMMMTSGEAVKYNSSLDAFKTIIAKEGTKSLFKGAGANILRAVAGAGVLAGYDKLQLIMFGKKYGSGGG. 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05474 367 PRINTS Adenine nucleotide translocator signature 66 78 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Seca3g05474 367 PRINTS Adenine nucleotide translocator signature 170 183 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Seca3g05474 367 PRINTS Adenine nucleotide translocator signature 144 156 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Seca3g05474 367 PRINTS Adenine nucleotide translocator signature 110 131 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Seca3g05474 367 PRINTS Adenine nucleotide translocator signature 275 291 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Seca3g05474 367 Pfam Mitochondrial carrier protein 169 262 IPR018108 -
Seca3g05474 367 Pfam Mitochondrial carrier protein 65 162 IPR018108 -
Seca3g05474 367 Pfam Mitochondrial carrier protein 270 357 IPR018108 -
Seca3g05474 367 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 59 366 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Seca3g05474 367 ProSiteProfiles Solute carrier (Solcar) repeat profile. 270 356 IPR018108 -
Seca3g05474 367 SUPERFAMILY Mitochondrial carrier 65 352 IPR023395 -
Seca3g05474 367 Gene3D Mitochondrial carrier domain 67 363 IPR023395 -
Seca3g05474 367 FunFam ADP,ATP carrier protein, mitochondrial 67 363 - -
Seca3g05474 367 PRINTS Mitochondrial carrier protein signature 69 82 IPR002067 GO:0055085
Seca3g05474 367 PRINTS Mitochondrial carrier protein signature 185 203 IPR002067 GO:0055085
Seca3g05474 367 PRINTS Mitochondrial carrier protein signature 235 253 IPR002067 GO:0055085
Seca3g05474 367 PRINTS Mitochondrial carrier protein signature 132 152 IPR002067 GO:0055085
Seca3g05474 367 PRINTS Mitochondrial carrier protein signature 82 96 IPR002067 GO:0055085
Seca3g05474 367 PRINTS Mitochondrial carrier protein signature 279 301 IPR002067 GO:0055085
Seca3g05474 367 ProSiteProfiles Solute carrier (Solcar) repeat profile. 64 158 IPR018108 -
Seca3g05474 367 ProSiteProfiles Solute carrier (Solcar) repeat profile. 170 262 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05474 Seca-Chr3 109582085 109585086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05474 3 358 Antiporters AT4G28390 79.839 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05474 K05863 - gmx:100785990 657.136