LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g05474	ATGGCGGATGGATCACATCCGCAGCATCCGTCGGTAGTGCAGAAGTTATCTGGACAGTCCTATCTTGTGTCCAGGCTCACTCCTAATCAATATAGAAACAATTCTACAACTGGTACTTACTTCAATGGAGGTGTGCAGTCTTCGGTTTTGGTTCCGGTTACTGTGTCTGCTCCGGCAGAGAAAGGTGCATCTGGATTTTTGGTGGATTTTCTCATGGGAGGAGTGTCGGCTGCCGTGTCTAAGACAGCTGCTGCTCCAATAGAACGAGTTAAGTTGCTCATTCAAAACCAGGATGAAATGATTAAAAGTGGTCGGTTATCTGAGCCATACAAGGGAATTGGTGATTGTTTTGGTCGAACCATTAAGGATGAAGGGGTGATCTCTCTTTGGAGAGGAAATACCGCTAATGTTATCAGATACTTCCCTACTCAGGTGGCTCTGAACTTTGCTTTTAAGGATTACTTCAAGAGGCTTTTCAACTTCAAAAAAGATAAAGATGGCTACTGGAAGTGGTTTGCTGGGAATTTGGCATCTGGTGGGGCTGCTGGTGCTTCTTCCCTCTTGTTTGTCTATTCTTTGGACTATGCCCGTACACGGTTAGCTAATGATGCAAAGGCTGCAAAGAAGGGTGGTGAAAGGCAGTTCAATGGCCTGATTGATGTTTACAAGAAAACACTTAAGTCTGATGGTATTGCTGGCCTTTATCGTGGATTCAACATCTCATGTGTCGGAATTATAGTGTATCGTGGTCTTTACTTTGGAATGTATGATTCTCTGAAACCAGTGGTTTTGGTTGGTGGAATGCAGGATAGTTTCTTTGCAAGTTTCTTTTTGGGATGGGGGATTACAATAGGTGCTGGCTTGGCCTCTTACCCAATTGATACTGTCCGAAGGAGGATGATGATGACATCCGGAGAAGCTGTAAAATACAATAGCTCTTTGGATGCATTCAAGACAATCATCGCAAAAGAGGGTACTAAGTCACTCTTCAAAGGTGCTGGTGCAAACATATTACGTGCTGTTGCAGGTGCCGGGGTGCTTGCTGGTTATGATAAGCTACAGCTCATCATGTTCGGAAAGAAGTATGGTTCTGGTGGAGGTTAA	1104	0.4429	MADGSHPQHPSVVQKLSGQSYLVSRLTPNQYRNNSTTGTYFNGGVQSSVLVPVTVSAPAEKGASGFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFGRTIKDEGVISLWRGNTANVIRYFPTQVALNFAFKDYFKRLFNFKKDKDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLVGGMQDSFFASFFLGWGITIGAGLASYPIDTVRRRMMMTSGEAVKYNSSLDAFKTIIAKEGTKSLFKGAGANILRAVAGAGVLAGYDKLQLIMFGKKYGSGGG.	368

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g05474	367	PRINTS	Adenine nucleotide translocator signature	66	78	IPR002113	GO:0005471\|GO:0005743\|GO:0140021\|GO:1990544
	Seca3g05474	367	PRINTS	Adenine nucleotide translocator signature	170	183	IPR002113	GO:0005471\|GO:0005743\|GO:0140021\|GO:1990544
	Seca3g05474	367	PRINTS	Adenine nucleotide translocator signature	144	156	IPR002113	GO:0005471\|GO:0005743\|GO:0140021\|GO:1990544
	Seca3g05474	367	PRINTS	Adenine nucleotide translocator signature	110	131	IPR002113	GO:0005471\|GO:0005743\|GO:0140021\|GO:1990544
	Seca3g05474	367	PRINTS	Adenine nucleotide translocator signature	275	291	IPR002113	GO:0005471\|GO:0005743\|GO:0140021\|GO:1990544
	Seca3g05474	367	Pfam	Mitochondrial carrier protein	169	262	IPR018108	-
	Seca3g05474	367	Pfam	Mitochondrial carrier protein	65	162	IPR018108	-
	Seca3g05474	367	Pfam	Mitochondrial carrier protein	270	357	IPR018108	-
	Seca3g05474	367	PANTHER	ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED	59	366	IPR002113	GO:0005471\|GO:0005743\|GO:0140021\|GO:1990544
	Seca3g05474	367	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	270	356	IPR018108	-

Showing 1 to 10 of 21 entries

Previous1 2 3Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g05474	Seca-Chr3	109582085	109585086	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g05474	3	358	Antiporters	AT4G28390	79.839	0.0	566

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g05474	K05863		-	gmx:100785990	657.136

Showing 1 to 1 of 1 entries