Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05473 ATGGTTTCTACTGAAAGATTGGATCTTTGGTTGTTTACGAGGAGGAGGGGGCTGGGAATTTTGTTCCAGATTGCATTTGGGTGGTGGCTTGTTCTTCTGTTACTTAGTCCTGTGGCAGGTCTCAGACCCTTAAGGGAGAGAACTCGGTCCTGGGGTGATGAGTGGCTATTTACAAGAAAGGATGAGGATGACATAGGTCCATTCTCACAATGGAACATAACAGGAACTTACAAAGGGACATGGAAGTTTTTAGATATCACAAATGGCTCTTCGAGATTTCCAGACATCAGAAAAACAAATGGCAATTCCATAATTGAATTAGTTACTACGCCCACAAAGATAACCGGAGTACATTATGTCCATGGGGTAGTTATTTTCCATGATGTGTTTGACAATGGATATGATGTTAGTGGTGCTAAAATCAGAGTAGAAGGTGTATATATATGGCCTTTTAGACAGCTTCGAATGGTAGCCAACAGTGGAAAAGAAGGAGAGTCGAATCAGGATGAAGATTATATTTTATCTAATCCATATCATCTGCTTGGAGTTTTCTCATCTCAGGTACTGCAAGATTCTTCACGAGATAAGATGTGGAGGGGAAAACACTCTCTGATGCGTGACATGGAGAAACATTGTAATATTGAAATTGCTGCACAGGTTTCACACTTGCCATCATCAAAAAACGAAGGCGAGCATGATCATTTTCATCTAGAAGGATTAATGGAGAGTCCCTCAGCTGATGATGATGGGGACTGCTTTTCACCATTACTGTTAAATGCAACTTCCGTTAAAATTGAGGTCTACTATAACAAAGCAGTGAACTATACCTTGATGGTTACTTTTGTCTCTTTCTTGCAAGTTCTTCTATTGATCCGTCAAATGGAGCATAGCAGCACTCAATCCGTAAGACCTTGCAATGGGGCTGCTAAGGTTTCAATATTAATGATTGGCCAGCAAGCAATAATGGATGCCTATCTTTGCCTTTTACACCTGACTGCCGGAATACTAGTTGAATCCTTATTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTCGTGGTATTCTCAATATTTGAGATGAGATATCTCCTTGCCATCTGGAAGGCAAGTAGGCCTTTGGGTAATGGAGAAGGTTGGGAGACAATGAGGCGTGAACTTTCAGTTTTATACAGTCGTTTCTATGGGATCCTATTGGGAGGCATTCTTCTCATGTATGAGTTCCATAATTATTTGAAACCAATTCTTCTTCTGATGTACTCCTTTTGGATACCTCAGATAATCACCAATGTTATGCGTGATTCACGCAAACCATTGCATCCTCACTATATATTAGGGTTATCAGTTACTCGGCTAGCAATACCATTATATATTTTTGGTTGCCCTAGCAACTTCATGCGTATAGAGTCAGACAAGAGCTGGTGTGTTTGGTTGGCTGTATTTATTGGGATTCAAGCTGCAATTCTTCTACTTCAACACTATCTTGGATCGCGCTGGTTCATTCCTCGACAGATTCTACCTGAGAAATACAGCTATTATAGGAGGTTTGATCAGGATACCAGACATTCTATAGACTGTGTTATTTGCATGACAGCCATTGATCTTTCCCAGCGATCTAATGACTGCATGGTGACACCTTGTGATCATTTCTTCCACTCTGGTTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGTCCAACTTGTCGCCGCAGTTTACCACCTGCATAG 1728 0.4074 MVSTERLDLWLFTRRRGLGILFQIAFGWWLVLLLLSPVAGLRPLRERTRSWGDEWLFTRKDEDDIGPFSQWNITGTYKGTWKFLDITNGSSRFPDIRKTNGNSIIELVTTPTKITGVHYVHGVVIFHDVFDNGYDVSGAKIRVEGVYIWPFRQLRMVANSGKEGESNQDEDYILSNPYHLLGVFSSQVLQDSSRDKMWRGKHSLMRDMEKHCNIEIAAQVSHLPSSKNEGEHDHFHLEGLMESPSADDDGDCFSPLLLNATSVKIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSSTQSVRPCNGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLGNGEGWETMRRELSVLYSRFYGILLGGILLMYEFHNYLKPILLLMYSFWIPQIITNVMRDSRKPLHPHYILGLSVTRLAIPLYIFGCPSNFMRIESDKSWCVWLAVFIGIQAAILLLQHYLGSRWFIPRQILPEKYSYYRRFDQDTRHSIDCVICMTAIDLSQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRSLPPA. 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05473 575 CDD RING-H2_TUL1-like 519 574 - -
Seca3g05473 575 FunFam E3 ubiquitin-protein ligase, putative 511 575 - -
Seca3g05473 575 ProSiteProfiles Zinc finger RING-type profile. 525 569 IPR001841 -
Seca3g05473 575 Pfam Ring finger domain 524 569 IPR001841 -
Seca3g05473 575 SMART ringv_2 524 569 IPR011016 GO:0008270
Seca3g05473 575 SUPERFAMILY RING/U-box 505 573 - -
Seca3g05473 575 PANTHER RING ZINC FINGER PROTEIN 127 574 - -
Seca3g05473 575 SMART ring_2 525 568 IPR001841 -
Seca3g05473 575 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 511 575 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05473 Seca-Chr3 109566567 109576411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05473 516 573 C3H Transcription Factor Family AT1G53010 32.203 1.16e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05473 K23788 - gmx:100780140 1029.62