Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05452 ATGGATCATCCTCAACAAGGAAGTCAACCTTCTCCTTCAACCAAAGTTGAAAGAAGGATCGTAGAGAAAAACAGGAGAAACCAGATGAAGAGTCTCTATTCCAAACTCAACTCTCTCATCCCTACCTATAATCCCAAGGAAGCGTTACCACTGCCTGATCAAATTAACGAGGCGATAGACTACATCAAGAACTTAGAATCAAGGGTGAAGGTGGCGCAGGGGAAGAAAGAAAGCTTAATTGGAAGGAAGAGATCTCGTAGTGACTGTAGCACTTCTGGATCAAAAGGAAGCCTAAAACCGCCAAAAATCGAGATCCATGAAATCGGTTCTTCGCTACAAGTCATTATAATGTGTGGAGTTGATGACAAGTTCATTTTCAGTGAAATTATTCGAATACTTCATGAAGAGAACTTGGAAGTCATCAATGCCAATTCTTCTCTTGCTGGAGATTCCGTTCTTCATATTGTGCACGCAGAGATTCGGCAATCTTCCAGCAATACTCTATTCGGAGCGACCAAAGTAAGTGAGAGATTGAAGAAGTTTGTGAACGGATCTGTTAGTGATTTGGAAATAGAACCTGATTTATGGGATTCTGAAATTGGTACTGTGCCTTGGGGGCTTCTAGATAATATACAGTAA 639 0.41 MDHPQQGSQPSPSTKVERRIVEKNRRNQMKSLYSKLNSLIPTYNPKEALPLPDQINEAIDYIKNLESRVKVAQGKKESLIGRKRSRSDCSTSGSKGSLKPPKIEIHEIGSSLQVIIMCGVDDKFIFSEIIRILHEENLEVINANSSLAGDSVLHIVHAEIRQSSSNTLFGATKVSERLKKFVNGSVSDLEIEPDLWDSEIGTVPWGLLDNIQ. 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05452 212 MobiDBLite consensus disorder prediction 76 100 - -
Seca3g05452 212 MobiDBLite consensus disorder prediction 1 15 - -
Seca3g05452 212 Pfam Helix-loop-helix DNA-binding domain 16 66 IPR011598 GO:0046983
Seca3g05452 212 MobiDBLite consensus disorder prediction 1 22 - -
Seca3g05452 212 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 12 182 - -
Seca3g05452 212 FunFam Transcription factor bHLH162 6 91 - -
Seca3g05452 212 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 81 IPR036638 GO:0046983
Seca3g05452 212 Gene3D - 8 91 IPR036638 GO:0046983
Seca3g05452 212 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 65 IPR011598 GO:0046983
Seca3g05452 212 SMART finulus 19 71 IPR011598 GO:0046983
Seca3g05452 212 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05452 Seca-Chr3 109003383 109004265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05452 8 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 39.037 2.59e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g05452 HLH 2.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05452 - - gmx:100817883 266.159