Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05441 ATGTCTCCTCGTACCTTTTGCTTCCTCTTAATCCTTGACACAACTCTTGTATTTCTAAGTTCAGTGTCAGCAATTGAATTTGTCTATAATAGAAACTTCAACTCTACCAACATAAAGCTCTATGGGAATGCCACCATTCAAAAATCGATTCTTACTCTTACTAACCAGACTTTCTTCTCTATAGGTCGTGCCTTTTACCCTCACAGCATACCTATGAAACCACCCAACTCTTCCATCCCTCTTCCCTTTGCAACCTCTTTTATTTTCTCCATTGCTCCTTATAAGAACTTCCCTATTGCTCATGGTTTTGCTTTCATTTTCTCACCTGTGATGGCCATAAATGGAGCACTCTCTGGGAATTATTTGGGACTTTTTAACCGCTCCACTTCAGGTAATTCTTCCAACCATGTCTTTGCTGTTGAGTTTGATGATTTTAGAAACGAAGAGTTCAATGAAGAGAATGATAATCATGTGGGTGTTGACTTGAATTCAATGATTTCTGTGTATTCTGAACCTGCTGGGTATTGGGGTGGTGGGAAAGATGGTAAAGAATTGGAGAAGTTGAAACTGGCTAGTGGTTTAAACTATCAAGTTTGGATAGAGTTTGAGAATTCACAACTTAATGTTACTATGGCCCCAGCAGGGAAAAAGAAGCCTCAAAGGCCTTTGATTAGTAAGCCTATTAACCTTTCTGGGGTTTTGTTGGATGAAATGTATGTGGGGTTTTCTGGATCAACAGGGAGAATGGTGGATGTTTGTAGAATTCTGGCTTGGAGTTTTAGCCATTCAAATTTTTCAATTGGTGATGCTTTGAGTACCAAACATTTGCCCTTGTATGTGCATCCAAAGAAATTGATTTATAGATCAAACGGTTTCATTATTGGTGTCATTTTAGGTGCACTGTTTGTCATTGGTTGCTGCACTTTGGTGTTCTTCAGTTTGTCCAGAACCAGAAGGGAAGAGCAAGAGGAAAAAATTGAGGATTGGGAATTGGAGTATTGGCCACATAGGATCAGCTATCAGGAGATTTGTGATGCAACATGTGGATTCTCTGAGGAGAAAGTGATTGGTATTGGAACAAGTGGGAAAGTATACAAAGGAGTTTTGAAAGGAGTAGAAGTTGCAGTGAAGAGATTCAATCATGACACAGAGCATGGAATGAGAGAGTTCCTGGCAGAGATTTCAAGCCTAGGTAGAATGAAACACAGAAACTTAGTGGGTTTTAGAGGTTGGAGTAAAAGAAAAGGAGGAAAGTTGATGCTTGTTTATGATTACATGGAGAATGAGAGCTTGGACAAAAGGATCTTTGAATGTGAAGAAACCATGTTGCTGAGCTGGGAAGAAAGAAAGAGAGTTCTAGAAAATGTAGCCAGTGGAATTTTATATCTACATGAGGGTTGGGAAGTTGAGGTCTTGCATAGAGACATCAAAGCAAGTAATGTACTACTTGACAAGGATATGAATGCAAGGTTGGGAGATTTTGGGCTTGCAAGGTTGCATCACCAGGAACATGTGGCTGACACAACAAGAGTAATAGGGACTCTAGGGTACATGGCACCAGAACTAGTCAAAGTTGGAAGACCATCAACTGCAACTGATGTGTATAGTTTTGGAGTATTGGTTTTAGAAGTTGTATGTGGGAGAAGACCTATTGTAGTAGATAAGCCACCATTGGTTAACTGGGTATTTTCCCTTATGGAGAAAGGGGAATTGAGATGTGCTATTGATGAGCGTTTGAAGGCTCAAAGTGGATATAGCAATGAGGAAGCTGAGAGACTGCTTCATTTGGGTTTGTTATGTGCAAGTGTAGACCCTGCTGTTAGGCCAACAATGAGGCAGGTGGTGAAAGCATTGGAGGGAATAAAATGCACTGAGTGTAATGAAGAGTGCATCCATGCAGGTCTTATTGGAAAAATAAACTCAGCAGCATCATGGTCTAGGAGTTCAACAAGTTCTGCCCATACAAATTTTCCTACCTTGGACGATATTTTACCATTCAAATTTGATTCTACAGCATCTTTAAGCATCTCTTATCCTAGCCTCCAGCCAGAGTCAGATTTTGTCTCAGAAGGAAGGGCAAAGTTGCTTCTTCCAATGTCTCCACTTAAGTTCGTTCTCATTCTTCTTCACACTGTAACCATTATAACTTCTGTTTCCTCTACTGAATTTGTCTACAACACAAACTTCAACTCCACAAACATCAACCTATTTGGAAACGCCACTATTCAAAGCTCCATTCTAACTCTCACTAATCGCAGTTTCTTCTCCATAGGACGTGCTTTTTACCCTCAAAAAATACATACCAAACTAGCCAACTCTTCCACCCTTCTCCCTTTTGCAACCTCCTTCATTTTCTCTGTTGCCCCTATCAAAAACTTCATTACAGGTCATGGCTTTGCCTTCATATTTACACCATCAAGAGGTGTGAATGGCACGACCTCAACTGAGTATATTGGTCTTTTCAATTTTAGCAATAAAGGTAATCCTAACAACCATGTTTTTGGAGTTGAGTTTGATACAGTTAGAAATGAAGAATTCAACGATATAAATAACAATCATGTTGGTGTTGATATAAACTCACTTACTTCCTTGACTTCACATGAGGCTGGCTATTGGGGTGGGAAAAATGACAAGGAGTTTATGGTATTGAAGATGAAAAATGGAGAGAATTATCAGGTGTGGATTGAATTTATGCATTCCCAGCTTAACGTTACCATGGCTCTGGCAGGACAGAAGAAGCCTCGAGTGCCTCTTATCAGTAAGAATGTTAACCTTTCTGAGGTTCTTATGGATGAAACTTATGTTGGGTTCTGTGCAGCCACAGGGATGCTAATAGACAGTGCTAAGATTCTTGCTTGGAGTTTTAGTAATTCAAATTTTTCAATTGGTGATGCTTTAATTACAGACAACTTGCCTTCATTTGTCCTTCATAAGAGGTGGTTTTCTGGAGCACGAGCTTTAGCTGTAGGGGTGACCAGTGCTGTGTTTGTGTTAATCTTTGGTTGTGGCTATGTAGTGTTTTTCATTCTCTGTAGAGATAAGAAGGCAGAGGAAGAAATTGAAGACTGGGAACTGGAGTACTGGCCACATAGGATTAGTTTCCATGAGATTGATGCAGCAACAAGGGGGTTCTGTGAGGAGAATGTGGTTGCTATAGGAGGGAATGGAAAGGTATATAGAGGGGTTTTGCAAGGAGTAGAAGTTGCAGTCAAGAGAATCCCTCAAGAAAGAGAAGAAGGGATGAGAGAGTTTTTGGCTGAGGTTTCAAGCCTAGGCAGAATGAAACACAGAAATTTAGTAGGACTGAGAGGTTGGTGCAAAAAAGAAAAGGGAAACTTGATTCTAGTTTATGACTTCATGAGTAATGGAAGTTTAGACAAAAGGATCTTTGAGTGTGAAGAGGGAAAGATGCTAACTTGGGAAGAGAGGATTGAGGTTTTGAAAAATGTAGCTGCAGGGATTCTATACCTGCATGAGGGTTGGGATGTTAAGGTCTTGCACAGGGACATCAAAGCAAGCAATGTTCTACTTGACAAGGACATGAATGCTAGATTGGGGGATTTTGGATTGGCTCGTATGCATGATCATCATGGACAAGTGGCCAGCACAACAAGAGTAATAGGGACAGTAGGATACATTGCTCCTGAAGTACTTCGAACAGGAACAGCATCAACCATGTCTGATGTGTTTGGTTTTGGAATTTTATTGCTGGAAGTAATTTGTGGGCGAAGGCCTATTGAAGAATATAAACCAGGGCTAATTGAATGGGTGATGTCCCTAATGGTGTATGGCCAATTGCACAATGCTGTTGATGAAAGGTTGAAGGCTAAAGGGGGATACACCATTGAGGAAGCTGAGAGATTGCTACATTTGGGTTTAATGTGTTCAAATTCAGACCCTAGTATTAGACCAACGATGAGACAGGTTGTGAAAATGCTGGAGGGAGAAATGGACAACATTGAGTCAGATGAAGAAAGTATAGAGATGAGTTTGCTTGGAAAAATAAAATCAGCTGCAATGTGGTCCAAAACTGAATGTAAATTTCCATACAGAGGTCACCCTACTTTTGAAGAAATTAGGATGTTCAGTTATAATTCTAAGGCATCTACAAGTGGCTCAGGTACCATTCCAGAATCAGATTCAGATATCATCCGAGAAGGCAGGTAA 4167 0.4032 MSPRTFCFLLILDTTLVFLSSVSAIEFVYNRNFNSTNIKLYGNATIQKSILTLTNQTFFSIGRAFYPHSIPMKPPNSSIPLPFATSFIFSIAPYKNFPIAHGFAFIFSPVMAINGALSGNYLGLFNRSTSGNSSNHVFAVEFDDFRNEEFNEENDNHVGVDLNSMISVYSEPAGYWGGGKDGKELEKLKLASGLNYQVWIEFENSQLNVTMAPAGKKKPQRPLISKPINLSGVLLDEMYVGFSGSTGRMVDVCRILAWSFSHSNFSIGDALSTKHLPLYVHPKKLIYRSNGFIIGVILGALFVIGCCTLVFFSLSRTRREEQEEKIEDWELEYWPHRISYQEICDATCGFSEEKVIGIGTSGKVYKGVLKGVEVAVKRFNHDTEHGMREFLAEISSLGRMKHRNLVGFRGWSKRKGGKLMLVYDYMENESLDKRIFECEETMLLSWEERKRVLENVASGILYLHEGWEVEVLHRDIKASNVLLDKDMNARLGDFGLARLHHQEHVADTTRVIGTLGYMAPELVKVGRPSTATDVYSFGVLVLEVVCGRRPIVVDKPPLVNWVFSLMEKGELRCAIDERLKAQSGYSNEEAERLLHLGLLCASVDPAVRPTMRQVVKALEGIKCTECNEECIHAGLIGKINSAASWSRSSTSSAHTNFPTLDDILPFKFDSTASLSISYPSLQPESDFVSEGRAKLLLPMSPLKFVLILLHTVTIITSVSSTEFVYNTNFNSTNINLFGNATIQSSILTLTNRSFFSIGRAFYPQKIHTKLANSSTLLPFATSFIFSVAPIKNFITGHGFAFIFTPSRGVNGTTSTEYIGLFNFSNKGNPNNHVFGVEFDTVRNEEFNDINNNHVGVDINSLTSLTSHEAGYWGGKNDKEFMVLKMKNGENYQVWIEFMHSQLNVTMALAGQKKPRVPLISKNVNLSEVLMDETYVGFCAATGMLIDSAKILAWSFSNSNFSIGDALITDNLPSFVLHKRWFSGARALAVGVTSAVFVLIFGCGYVVFFILCRDKKAEEEIEDWELEYWPHRISFHEIDAATRGFCEENVVAIGGNGKVYRGVLQGVEVAVKRIPQEREEGMREFLAEVSSLGRMKHRNLVGLRGWCKKEKGNLILVYDFMSNGSLDKRIFECEEGKMLTWEERIEVLKNVAAGILYLHEGWDVKVLHRDIKASNVLLDKDMNARLGDFGLARMHDHHGQVASTTRVIGTVGYIAPEVLRTGTASTMSDVFGFGILLLEVICGRRPIEEYKPGLIEWVMSLMVYGQLHNAVDERLKAKGGYTIEEAERLLHLGLMCSNSDPSIRPTMRQVVKMLEGEMDNIESDEESIEMSLLGKIKSAAMWSKTECKFPYRGHPTFEEIRMFSYNSKASTSGSGTIPESDSDIIREGR. 1389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05441 1388 CDD lectin_legume_LecRK_Arcelin_ConA 25 261 IPR001220 GO:0030246
Seca3g05441 1388 Gene3D - 718 959 - -
Seca3g05441 1388 FunFam L-type lectin-domain containing receptor kinase S.4 1120 1326 - -
Seca3g05441 1388 FunFam L-type lectin-domain containing receptor kinase S.4 719 963 - -
Seca3g05441 1388 Gene3D - 23 273 - -
Seca3g05441 1388 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 1005 1119 - -
Seca3g05441 1388 SUPERFAMILY Protein kinase-like (PK-like) 327 619 IPR011009 -
Seca3g05441 1388 Gene3D Transferase(Phosphotransferase) domain 1 426 634 - -
Seca3g05441 1388 Gene3D Transferase(Phosphotransferase) domain 1 1120 1335 - -
Seca3g05441 1388 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 311 425 - -
Seca3g05441 1388 PANTHER - 738 1317 - -
Seca3g05441 1388 Gene3D Phosphorylase Kinase; domain 1 311 425 - -
Seca3g05441 1388 Gene3D Phosphorylase Kinase; domain 1 1009 1119 - -
Seca3g05441 1388 ProSitePatterns Protein kinases ATP-binding region signature. 356 377 IPR017441 GO:0005524
Seca3g05441 1388 SUPERFAMILY Protein kinase-like (PK-like) 1021 1314 IPR011009 -
Seca3g05441 1388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Seca3g05441 1388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1165 1177 IPR008271 GO:0004672|GO:0006468
Seca3g05441 1388 SUPERFAMILY Concanavalin A-like lectins/glucanases 721 958 IPR013320 -
Seca3g05441 1388 FunFam L-type lectin-domain containing receptor kinase S.4 426 630 - -
Seca3g05441 1388 CDD STKc_IRAK 1053 1315 - -
Seca3g05441 1388 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 263 IPR013320 -
Seca3g05441 1388 ProSiteProfiles Protein kinase domain profile. 350 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05441 1388 CDD STKc_IRAK 356 621 - -
Seca3g05441 1388 MobiDBLite consensus disorder prediction 1367 1388 - -
Seca3g05441 1388 ProSiteProfiles Protein kinase domain profile. 1044 1317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05441 1388 SMART serkin_6 1044 1313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05441 1388 SMART serkin_6 350 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05441 1388 Pfam Protein kinase domain 351 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05441 1388 Pfam Protein kinase domain 1050 1311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05441 1388 CDD lectin_legume_LecRK_Arcelin_ConA 721 958 IPR001220 GO:0030246
Seca3g05441 1388 Pfam Legume lectin domain 721 959 IPR001220 GO:0030246
Seca3g05441 1388 Pfam Legume lectin domain 25 264 IPR001220 GO:0030246
Seca3g05441 1388 FunFam L-type lectin-domain containing receptor kinase S.4 23 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05441 Seca-Chr3 108792932 108797858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05441 22 569 Receptor kinase-like Gene Family AT4G04960 56.679 0.0 599
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca3g05441 Pkinase 2.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05441 - - gmx:100776006 1156.74