Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05440 ATGGGTTGCATATCTTCCAAGAGTTCAGCTGTGGAAGACAGCAGGGAAGGCTTGGCAAAGGAATTGTCATCATCTAGCAAAAGGACCTCTGAGATGAAGGTTTCACGATTGAATTCCAAGAAAAGGGTCGAGGGAGTTTGGGTAAAAGAGAAGCTCTTAGATGGTGCTGAAATGAAAGCTTCATTAATTGACAAGAAGGCCAATGGTTCAGTGCGGTTGTGTGATGATCAAAATGGGAAGAAGAAAACGGAGAAACCTGAATTGACTGTTGTTGATTATCCTGGCCTTGGAAGAGTACCAAAGGCTTCAGAAGGAGAGCAAGTTGCAGCAGGATGGCCAACTTGGCTTTCTTCTGTTGCTGGTGAAGCTATCCAGGGGTGGATACCACGGAGTGCAAATACTTTTGAGAGGTTTAATAAGATTGGCCAAGGAACTTACAGCACTGTTTATAAGGCACGCGATGTGACTAACCAAAAGATAGTTGCCTTGAAGAGGGTACGCTTTGATAATCTTGATCCTGAGAGCATCAAGTTTATGGCAAGGGAAATCCTTATTCTGCGCAGGCTTGACCATCCAAATGTGATAAAGTTGGAGGGCTTGATAACATCACAAACATCTCGCAACTTGTACCTTGTTTTTGAATATATGGAACATGATCTTACAGGACTTGCATCAGGCCCTGGCATTAAGTTTTCTGAACCACAGATTAAATGCTACATGCAGCAGCTTCTTAGTGGATTGGATCATTGTCATAGTCGCGGTGTCCTCCACCGTGACATAAAGGGTTCAAATCTTCTCATTGACAATAATGGCATCTTAAAGATTGCAGATTTTGGTTTAGCAAATTATTTTGACCCCCAACACAGTGTTCCATTGACCAGCCGTGTAGTAACTCTGTGGTATAGACCACCAGAACTTTTACTTGGAGCATCTAAGTATGGAGTTGCAGTGGATTTGTGGAGCACTGGTTGCATTCTGGGGGAACTATACTGTGGCAGGCCCATATTGCCTGGAAAAACAGAGGTTGAGCAATTGCATAGGATTTTTAAACTCTGTGGATCACCATCTGAGGACTATTGGCGTAAATTACGGTTGCCCCATTCAACAGTTTTCAGGCCTCCACACTATTATAGGCGTTGTCTTGCAGAAACATTTAAAGAATATCCATCTGCAGCTGTGAGGCTTATAGAAACCCTACTTTCTGTAGATCCTACTCTTCGAGGAACAGCAGCGACAGCTCTGAAGAATGAGTTCTTTTCATCAGAACCCCTTGCTTGTGATCCATCAACTTTACCAAAATATCCTCCCAGCAAAGAGATTGACACTAAATTGCGGGAAGAAGCAACAAGAAGGCAAGGAGCTGTTGGGGAAAAGGAGCAAAAAGTCAGACCAGGAGTTAGACAAGAGAAAGAAACCCGGACTTTTTTCTTATCCAAAGACAATGTTGACTCTCACATATTGATGCAGCAAGGGCAATACCTTTTGAACTCAAAGAGCCGGAATGAATTGTTCAACCCTCACAGAGAACCTGTGTCTGGATTTTTGGGTTTGTCAAACAAACAGTCAGAAGATGTTAAAGAAATGGGTAATTATTTCTCTGGGCCTCTTTATCATAGGTCTTCACATTCAGGTTCATTAGTTCCAGGATTAGGCTGGGACAAACTTGGAAAGGAAGCTGGTGAGTGGCGGCCTCCTGTTTCAAACCAAGTCAACCCATCAAAACTATCTGGGTCAGTGACATGTAGGACTTCATTGTCTGGAGATCAAAAAGAAAACCCAGTTCCCTTGAGGCCCAGAGAAACAATTCAAATACACAAGTCTTTGGAGTCAACTAATACATCAGAGTCAAGAAGAAGACATGATAGAAAACGCCATTCTCAGATAATTGATCTCAGCCAAATAGAAAATGGAAAGGTTTCTGGTGCAACATTAATTCAGGATGTGCATGGGTCCAGGGGAAACATGATGCACCTCTCTGGTCCATTACTGGTTCCATCAAACAATATGGATCAGATGCTCAAAGAGCGCGATCGAAAGATCCAAGAATATTCAAGACGAGCCCGAATGGACAAAGTCCAGAGGTGA 2085 0.4297 MGCISSKSSAVEDSREGLAKELSSSSKRTSEMKVSRLNSKKRVEGVWVKEKLLDGAEMKASLIDKKANGSVRLCDDQNGKKKTEKPELTVVDYPGLGRVPKASEGEQVAAGWPTWLSSVAGEAIQGWIPRSANTFERFNKIGQGTYSTVYKARDVTNQKIVALKRVRFDNLDPESIKFMAREILILRRLDHPNVIKLEGLITSQTSRNLYLVFEYMEHDLTGLASGPGIKFSEPQIKCYMQQLLSGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLANYFDPQHSVPLTSRVVTLWYRPPELLLGASKYGVAVDLWSTGCILGELYCGRPILPGKTEVEQLHRIFKLCGSPSEDYWRKLRLPHSTVFRPPHYYRRCLAETFKEYPSAAVRLIETLLSVDPTLRGTAATALKNEFFSSEPLACDPSTLPKYPPSKEIDTKLREEATRRQGAVGEKEQKVRPGVRQEKETRTFFLSKDNVDSHILMQQGQYLLNSKSRNELFNPHREPVSGFLGLSNKQSEDVKEMGNYFSGPLYHRSSHSGSLVPGLGWDKLGKEAGEWRPPVSNQVNPSKLSGSVTCRTSLSGDQKENPVPLRPRETIQIHKSLESTNTSESRRRHDRKRHSQIIDLSQIENGKVSGATLIQDVHGSRGNMMHLSGPLLVPSNNMDQMLKERDRKIQEYSRRARMDKVQR. 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05440 694 MobiDBLite consensus disorder prediction 562 626 - -
Seca3g05440 694 SMART serkin_6 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05440 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Seca3g05440 694 CDD STKc_CDK9_like 135 419 - -
Seca3g05440 694 SUPERFAMILY Protein kinase-like (PK-like) 128 425 IPR011009 -
Seca3g05440 694 ProSitePatterns Protein kinases ATP-binding region signature. 141 164 IPR017441 GO:0005524
Seca3g05440 694 MobiDBLite consensus disorder prediction 1 36 - -
Seca3g05440 694 Gene3D Phosphorylase Kinase; domain 1 129 222 - -
Seca3g05440 694 FunFam probable serine/threonine-protein kinase At1g54610 122 217 - -
Seca3g05440 694 MobiDBLite consensus disorder prediction 566 590 - -
Seca3g05440 694 Gene3D Transferase(Phosphotransferase) domain 1 223 458 - -
Seca3g05440 694 PANTHER CELL DIVISION PROTEIN KINASE 133 424 - -
Seca3g05440 694 FunFam probable serine/threonine-protein kinase At1g54610 218 459 - -
Seca3g05440 694 ProSiteProfiles Protein kinase domain profile. 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05440 694 Pfam Protein kinase domain 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05440 Seca-Chr3 108785709 108792034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05440 127 463 Core Cell Cycle Gene Families AT5G10270 49.292 3.69e-111 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Seca3g05440 Pkinase 3.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05440 - K08819 gmx:100775462 1104.35