Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05435 ATGGTATCAGAGCCTATCCTAGATGATCCGTTGTTATTGGGCCGCCACCCGTATAAGATGTCCACGCTCCAGATGTCCAGCCCTGGGCGTGAGGGGAGCTACACGGAATTAACTGGGACTTCTTGGACCTATCTATACTTCATTAGCTTCTACTTAATCACTGTGTTGCTGCTTTTGAATTTGATTATTGCTTTTGTCTTGGAGGCATTCTTTGCTGAAATGGATCTTGAGTCATCAGAAACTTGTGATGGAAATGACAAGGAAGCTGAAGGAGATAAACAACGAAGGCCGCGATCTGTTGGCACAAAAACACGAAGCCAGAGGGTTGATGCTCTTCTTCATCATATGTTGAGTGCTGAGTTGTGTCAAAATCAGCCTTCCAATACATAA 390 0.4436 MVSEPILDDPLLLGRHPYKMSTLQMSSPGREGSYTELTGTSWTYLYFISFYLITVLLLLNLIIAFVLEAFFAEMDLESSETCDGNDKEAEGDKQRRPRSVGTKTRSQRVDALLHHMLSAELCQNQPSNT. 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05435 129 Gene3D - 17 112 - -
Seca3g05435 129 Pfam Ion transport protein 36 70 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca3g05435 129 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 33 126 IPR044581 GO:0005245
Seca3g05435 129 MobiDBLite consensus disorder prediction 79 106 - -
Seca3g05435 129 MobiDBLite consensus disorder prediction 80 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05435 Seca-Chr3 108654333 108659186 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05435 33 129 Ion Channels AT4G03560 58.763 5.58e-33 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05435 K16900 - gmx:100806160 160.999