Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05434 ATGGAGCCTCTGCTCAGAGGCGAAAGCAGTGGCACTGGCCGGAGGTACCGGCAGCGAGGGATATTCGGCCGCTCCGATGCTATCACCTACGGCTCCAACTACGAGAAAGCCGCCGCTCTCGTCGATCTGGCTGAAGATGGTGTTGGTATACCTGAGCAGATTCTGGATTCATCAAACTTTCAAAGTTATGCAAGATTTTATTTTATCTTCACTAAATGTGATCTCATCTGGTCTCTTAGTTATTTTGCTTTGATAGTCCTGAATTTCCTGGAGAAACCTCTGTGGTGTGAGAAGTATACAACACAATCTTGCAAAGATAGAGAGTATTTCTTTTTGGGACAGTTGCCATATCTAACTGCTGCAGAATGTCTTATTTATGAGGGAATAGCTCTTGTTTTGCTAATCATTCATACTTTCTTCCCATTATCATATGAAGGGTCCCGTATATACTGGAAAAATGCTATTAATCAATTGAAGGCCTTCTGTATCTTAATTCTTGTTGCTGATATGCTGGTTTATGCTCTTTATATGTCTTCACTGGCTTTTGATTTTCTACCTTTCAGAATTGCACCTTATATCAGGGTTGTTCTTTTCGTTCTGAATATTAGGGAGCTACGAGAAACTGTCATCATCTTGGTTGGAATGCTTGACACATACTTAAATATCTTGGCTTTGGGACTTCTGTTCCTTGTTTTTGCAAGTTGGGTGGCTTATGTGATTTTTGAAGATACAATACAGGGGAAAACAGTATTCACTTCCTACGGTACTACATTATATCAGATGTTTCTTTTATTTACCACAGCCAATAATCCAGATGTTTGGCTTCCTGCATACAAGTCTTCACGTTGGTATTGCCTGTTTTTCATTCTCTTTGTGCTGTTGGGAGTATACTTTGTTACAAACTTGGTCCTTGCCGTTGTTTATGAGAGTTTCAAGAGTGAGCTTGTAAAACAAGTTTTTGAGACGGATCAAAAGAGAAGAGCTATGCTGGAAAAAGCTTTTAATCTCCTAGATACACATAATGTTGGATTTCTTAACAAAGATCAATGTATTAGGCTCTTTGAGGAGCTGAACAAGTACAGGACTTTGCCAAATATCTCCCGGGAAGAATTTGAGTTGATATTTGATGAGCTGGATGATAGTCATGATGTAAAGATCAACAAGGATGAATTTGCTGATATTTGTAATGCCATTGCTTTAAAATTCCAGAAGGAGGAATCTCTTTCTTACTTTGAGTATTTAGTATTCTACCATTCACCCACCTCAAAGAGATTGAAAGCCTTCGTGAAGAGCCCCATGTTTGGATACCTAGTGTCCTTCATTCTCATACTGAATCTGGTTGCTGTAATTATTGAGACAACGCTTGATATAGAAAACAATTCTGGTCAAAAGGTGTGGCAAGTGGTTGAGTTCGTTTTTGGGTGGATATACGTAATAGAAATGGCTCTAAAGGTTTATGCATATGGATTTGAGAACTATTGGCGGGATGGTCAAAATCGCTTTGATTTTATCATCACATTGATAATTGTCATTGGAGAAACTATAACTTTTGCTTCACCTGATGGTCTTCTTTTTTTCTCAAATGGAGAATGGATTCGTTACCTTCTTCTTGCAAGAATGTTGAGATTGATAAGGCTCCTAATGCATGTCAAGCGATACCGAGGCTTTGTGGCAACTTTCTTAACGCTTATACCAAGTTTGATGCCATACCTAGGGATCATATTTTGTGTCTTATGTATTTATTGCTCACTTGGTGTACAGATTTTTGGTGGAATCGTTAATGCTGGAAACCCCAAATTGGAAACAACAGACCTTGCGGATAATGAGTATCCTTTGTTCATCTATAAAACTATCTCCTTTAAACCTGTAGCAGTGGGTTTAATCCAGTAA 1890 0.3868 MEPLLRGESSGTGRRYRQRGIFGRSDAITYGSNYEKAAALVDLAEDGVGIPEQILDSSNFQSYARFYFIFTKCDLIWSLSYFALIVLNFLEKPLWCEKYTTQSCKDREYFFLGQLPYLTAAECLIYEGIALVLLIIHTFFPLSYEGSRIYWKNAINQLKAFCILILVADMLVYALYMSSLAFDFLPFRIAPYIRVVLFVLNIRELRETVIILVGMLDTYLNILALGLLFLVFASWVAYVIFEDTIQGKTVFTSYGTTLYQMFLLFTTANNPDVWLPAYKSSRWYCLFFILFVLLGVYFVTNLVLAVVYESFKSELVKQVFETDQKRRAMLEKAFNLLDTHNVGFLNKDQCIRLFEELNKYRTLPNISREEFELIFDELDDSHDVKINKDEFADICNAIALKFQKEESLSYFEYLVFYHSPTSKRLKAFVKSPMFGYLVSFILILNLVAVIIETTLDIENNSGQKVWQVVEFVFGWIYVIEMALKVYAYGFENYWRDGQNRFDFIITLIIVIGETITFASPDGLLFFSNGEWIRYLLLARMLRLIRLLMHVKRYRGFVATFLTLIPSLMPYLGIIFCVLCIYCSLGVQIFGGIVNAGNPKLETTDLADNEYPLFIYKTISFKPVAVGLIQ. 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05434 629 SUPERFAMILY Voltage-gated potassium channels 431 591 - -
Seca3g05434 629 Gene3D - 204 311 - -
Seca3g05434 629 CDD EFh 329 394 IPR002048 GO:0005509
Seca3g05434 629 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 3 614 IPR044581 GO:0005245
Seca3g05434 629 FunFam Two pore calcium channel protein 1 424 556 - -
Seca3g05434 629 Gene3D - 312 396 - -
Seca3g05434 629 Gene3D - 423 557 IPR027359 -
Seca3g05434 629 FunFam Two pore calcium channel protein 1 204 315 - -
Seca3g05434 629 SUPERFAMILY EF-hand 315 398 IPR011992 -
Seca3g05434 629 Pfam Ion transport protein 131 313 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca3g05434 629 Pfam Ion transport protein 432 598 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca3g05434 629 Pfam EF-hand domain pair 330 394 IPR002048 GO:0005509
Seca3g05434 629 ProSiteProfiles EF-hand calcium-binding domain profile. 366 401 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05434 Seca-Chr3 108633056 108652993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05434 2 613 Ion Channels AT4G03560 68.026 0.0 877
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05434 K16900 - gmx:100806160 1043.49