Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05427 ATGGCCTTAAATCAGTATTTTGAGGAGGGTGTGCCCCAAATAGATTCCTTTGAAAATAAATCATCTCTGGAAATGCGGAAATGTGCTAGTGATGCTATTGCTGATTCTGATAAAAATGCCTACAGTGGCTTTGACTGCAACATCTGCCTGGAGTGTGTGCAAGATCCAGTGGTCACTCTTTGTGGTCATCTTTACTGCTGGCCCTGCATTTACAAGTGGCTTAATTTCCATACAATCTCATCTGAAAATGAAGAGAAGCAGATGCCACAATGTCCAGTATGCAAATCACAAATTTCAGAGTCATCCCTTGTTCCACTATACGGCCGTGGCCAAACAACATCACCTTCTAAAGGAAAGACTCAGCAAGTAGGGATGATCATACCAAGAAGACCAGCTGGTCCTTCATGGGTGGCTCACTTACCAAGATCACATGATACTTCTACTGTTTCACAACACACCTCTCAAGTTTTTCATCCCCATTATGCTAGACATCCTCAACAATTCAACTCAATTTCAAGCAGTTACACCTCACCAATGCTTAACACAGGAGGTTCACTAACTTATGGAGTCTTTGGTGAGATGATATATGCCAGGGTCTTTGGAAACCAGGTGACAAACATATATACTTACCCTAATTCATATGATCTTTCGGGGACCAGTAATACAAGGATCAGAAGGCATTTAATGCAAGCTGATAAGTCACTCAGTAGAATCTGTTTTTTCCTCCTGTGTTGCATAGTTTTGTGCCTTCTCTTATTCTGA 762 0.4147 MALNQYFEEGVPQIDSFENKSSLEMRKCASDAIADSDKNAYSGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNFHTISSENEEKQMPQCPVCKSQISESSLVPLYGRGQTTSPSKGKTQQVGMIIPRRPAGPSWVAHLPRSHDTSTVSQHTSQVFHPHYARHPQQFNSISSSYTSPMLNTGGSLTYGVFGEMIYARVFGNQVTNIYTYPNSYDLSGTSNTRIRRHLMQADKSLSRICFFLLCCIVLCLLLF. 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05427 253 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Seca3g05427 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 124 IPR013083 -
Seca3g05427 253 SMART ring_2 46 94 IPR001841 -
Seca3g05427 253 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 17 250 IPR045103 GO:0005783|GO:0006511|GO:0061630
Seca3g05427 253 Pfam Zinc finger, C3HC4 type (RING finger) 46 94 IPR018957 GO:0046872
Seca3g05427 253 SUPERFAMILY RING/U-box 41 107 - -
Seca3g05427 253 ProSiteProfiles Zinc finger RING-type profile. 46 95 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05427 Seca-Chr3 108486194 108489345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05427 23 253 C3H Transcription Factor Family AT4G28270 38.235 2.43e-45 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05427 K10666 - gmx:100785491 353.599